java.lang.Object

org.biojava.nbio.structure.align.gui.MultipleAlignmentCalc

All Implemented Interfaces:: Runnable, AlignmentCalculationRunnable

public class MultipleAlignmentCalc extends Object implements AlignmentCalculationRunnable

A class that obtains structures via DAS and aligns them. This is done in a separate thread. It is possible to register Event listeners to get notification of when the download has finished.

Since:: 4.2.0
Author:: Aleix Lafita

Constructor Summary

Constructors

Constructor

Description

MultipleAlignmentCalc(MultipleAlignmentGUI parent, List<Structure> structures, List<StructureIdentifier> names)

Requests an alignment of the pdbs.
Method Summary

Modifier and Type

Method

Description

void

cleanup()

void

interrupt()

void

run()

void

setNrCPUs(int useNrCPUs)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- MultipleAlignmentCalc
  
  public MultipleAlignmentCalc(MultipleAlignmentGUI parent, List<Structure> structures, List<StructureIdentifier> names)
  
  Requests an alignment of the pdbs. If they are empty strings, they are ignored.
  
  Parameters:
  
  parent - the gui frame that interacts with this class
  
  structures -
  
  names -
Method Details
- run
  
  public void run()
  
  Specified by:
  
  run in interface Runnable
- interrupt
  
  public void interrupt()
  
  Specified by:
  
  interrupt in interface AlignmentCalculationRunnable
- cleanup
  
  public void cleanup()
  
  Specified by:
  
  cleanup in interface AlignmentCalculationRunnable
- setNrCPUs
  
  public void setNrCPUs(int useNrCPUs)
  
  Specified by:
  
  setNrCPUs in interface AlignmentCalculationRunnable

Class MultipleAlignmentCalc

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

MultipleAlignmentCalc

Method Details

run

interrupt

cleanup

setNrCPUs