Class MenuCreator

Method Details

• initJmolMenu

  public static JMenuBar initJmolMenu(JFrame frame, AbstractAlignmentJmol parent, AFPChain afpChain, MultipleAlignment msa)

  Provide a JMenuBar that can be added to a JFrame containing a JmolPanel. The alignment has to be either an AFPChain or a MultipleAlignment: set the other parameter to null.

  Menus included:

  • File: open, save, export, import, exit.
  • Align: new pairwise alignment, new multiple alignment.
  • View: aligment panel, aligned pairs, text format, FatCat format, distance matrices, dot plot.
  • Help

  Returns:

  a JMenuBar

• getDBResultMenuItem

  public static JMenuItem getDBResultMenuItem()

• getShowPDBMenuItem

  public static JMenuItem getShowPDBMenuItem()

• getOpenPDBMenuItem

  public static JMenuItem getOpenPDBMenuItem()

• getLoadMenuItem

  public static JMenuItem getLoadMenuItem()

• getAlignmentPanelMenu

  public static JMenuBar getAlignmentPanelMenu(JFrame frame, ActionListener actionListener, AFPChain afpChain, MultipleAlignment msa)

  Create the menu for the Alignment Panel representation of Structural Alignments. The alignment can be in AFPChain format or in the MultipleAlignment format.

  Parameters:

  frame -

  actionListener -

  afpChain -

  MultipleAlignment -

  Returns:

  a JMenuBar

• getAlignmentTextMenu

  public static JMenuBar getAlignmentTextMenu(JFrame frame, ActionListener actionListener, AFPChain afpChain, MultipleAlignment msa)

  Create the menu for the Text representations of Structural Alignments.

  Parameters:

  frame -

  actionListener -

  afpChain -

  msa -

  Returns:

  a JMenuBar

• getIcon

  protected static JMenuItem getIcon(ActionListener actionListener, String text)

• getPrintMenuItem

  public static JMenuItem getPrintMenuItem()

• getExportPDBMenuItem

  public static JMenuItem getExportPDBMenuItem(AbstractAlignmentJmol parent)

• getSaveAlignmentMenuItem

  public static JMenuItem getSaveAlignmentMenuItem(AFPChain afpChain, MultipleAlignment msa)

• getAboutMenuItem

  public static JMenuItem getAboutMenuItem()

• getExitMenuItem

  public static JMenuItem getExitMenuItem()

• getHelpMenuItem

  public static JMenuItem getHelpMenuItem()

• getCloseMenuItem

  public static JMenuItem getCloseMenuItem(JFrame frame)

• showAboutDialog

  public static void showAboutDialog()

  Show some info about this GUI

• showSystemInfo

  public static void showSystemInfo()

• createImageIcon

  public static ImageIcon createImageIcon(String path)

  Returns an ImageIcon, or null if the path was invalid.

  Parameters:

  path - the path to the icon

  Returns:

  ImageIcon object

• getPairwiseAlignmentMenuItem

  protected static JMenuItem getPairwiseAlignmentMenuItem()

• getMultipleAlignmentMenuItem

  protected static JMenuItem getMultipleAlignmentMenuItem()

• initAlignmentGUIMenu

  public static JMenuBar initAlignmentGUIMenu(JFrame frame)

• showMemoryMonitor

  protected static void showMemoryMonitor()