org.biojava.nbio.structure.align.gui.AlignmentCalcDB

public class AlignmentCalcDB extends Object implements AlignmentCalculationRunnable

Field Details
- SCOP_VERSION
  
  public static String SCOP_VERSION
Constructor Details
- AlignmentCalcDB
  
  public AlignmentCalcDB(AlignmentGui parent, Structure s1, String name1, UserConfiguration config, String outFile, Boolean domainSplit)
Method Details
- getAlgorithm
  
  public StructureAlignment getAlgorithm()
- setAlgorithm
  
  public void setAlgorithm(StructureAlignment algo)
- run
  
  public void run()
  
  Specified by:
  
  run in interface Runnable
- interrupt
  
  public void interrupt()
  
  stops what is currently happening and does not continue
  
  Specified by:
  
  interrupt in interface AlignmentCalculationRunnable
- cleanup
  
  public void cleanup()
  
  Specified by:
  
  cleanup in interface AlignmentCalculationRunnable
- setNrCPUs
  
  public void setNrCPUs(int useNrCPUs)
  
  Specified by:
  
  setNrCPUs in interface AlignmentCalculationRunnable
- isInterrupted
  
  public boolean isInterrupted()

Class AlignmentCalcDB

Field Summary