org.biojava.nbio.structure.align.fatcat.calc

package org.biojava.nbio.structure.align.fatcat.calc

Related Packages

Package

Description

org.biojava.nbio.structure.align.fatcat

Classes related to the implementation of the FATCAT alignment algorithm, here called jFATCAT.
Classes

Class

Description

AFPCalculator

a class that performs calculations on AFPCHains

AFPChainer

a class to chain AFPs to an alignment

AFPOptimizer

AFPPostProcessor

does post processing after alignment chaingin

FatCatAligner

A class that does calculations on an AFPChain

FatCatParameters

FCAlignHelper

SigEva

StructureAlignmentOptimizer