java.lang.Object

org.biojava.nbio.structure.align.client.JFatCatClient

public class JFatCatClient extends Object

Constructor Summary

Constructors

Constructor

Description

JFatCatClient()
Method Summary

Modifier and Type

Method

Description

static String

convertStreamToString(InputStream stream)

static AFPChain

getAFPChainFromServer(String serverLocation, String method, String name1, String name2, Atom[] ca1, Atom[] ca2, int timeout)

static AFPChain

getAFPChainFromServer(String serverLocation, String name1, String name2, Atom[] ca1, Atom[] ca2)

static final PdbPairsMessage

getPdbPairs(String url, int nrPair, String username)

int

getPositionInQueue(String serverLocation, String method, String name1, String name2)

int

getPositionInQueue(String serverLocation, String method, String name1, String name2, int timeout)

static int

getRandomSleepTime()

static final SortedSet<String>

getRepresentatives(String serverLocation, int cutoff)

static final int

getTimeout()

static boolean

hasPrecalculatedResult(String serverLocation, String method, String name1, String name2)

static boolean

hasPrecalculatedResult(String serverLocation, String method, String name1, String name2, int timeout)

static void

main(String[] args)

static final void

sendAFPChainToServer(String serverLocation, AFPChain afpChain, Atom[] ca1, Atom[] ca2)

static String

sendMultiAFPChainToServer(String serverLocation, String multiXML, String username)

static String

sendMultiAFPChainToServer(String serverLocation, String multiXML, String username, String version)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- JFatCatClient
  
  public JFatCatClient()
Method Details
- main
  
  public static void main(String[] args) throws Exception
  
  Throws:
  
  Exception
- hasPrecalculatedResult
  
  public static boolean hasPrecalculatedResult(String serverLocation, String method, String name1, String name2)
- hasPrecalculatedResult
  
  public static boolean hasPrecalculatedResult(String serverLocation, String method, String name1, String name2, int timeout)
- getPositionInQueue
  
  public int getPositionInQueue(String serverLocation, String method, String name1, String name2)
- getPositionInQueue
  
  public int getPositionInQueue(String serverLocation, String method, String name1, String name2, int timeout)
- getAFPChainFromServer
  
  public static AFPChain getAFPChainFromServer(String serverLocation, String name1, String name2, Atom[] ca1, Atom[] ca2)
- getAFPChainFromServer
  
  public static AFPChain getAFPChainFromServer(String serverLocation, String method, String name1, String name2, Atom[] ca1, Atom[] ca2, int timeout)
- convertStreamToString
  
  public static String convertStreamToString(InputStream stream)
- sendMultiAFPChainToServer
  
  public static String sendMultiAFPChainToServer(String serverLocation, String multiXML, String username) throws JobKillException
  
  Throws:
  
  JobKillException
- sendMultiAFPChainToServer
  
  public static String sendMultiAFPChainToServer(String serverLocation, String multiXML, String username, String version) throws JobKillException
  
  Throws:
  
  JobKillException
- getRandomSleepTime
  
  public static int getRandomSleepTime()
- sendAFPChainToServer
  
  public static final void sendAFPChainToServer(String serverLocation, AFPChain afpChain, Atom[] ca1, Atom[] ca2) throws JobKillException
  
  Throws:
  
  JobKillException
- getTimeout
  
  public static final int getTimeout()
- getPdbPairs
  
  public static final PdbPairsMessage getPdbPairs(String url, int nrPair, String username) throws IOException, JobKillException
  
  Throws:
  
  IOException
  
  JobKillException
- getRepresentatives
  
  public static final SortedSet<String> getRepresentatives(String serverLocation, int cutoff)

Class JFatCatClient

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

JFatCatClient

Method Details

main

hasPrecalculatedResult

hasPrecalculatedResult

getPositionInQueue

getPositionInQueue

getAFPChainFromServer

getAFPChainFromServer

convertStreamToString

sendMultiAFPChainToServer

sendMultiAFPChainToServer

getRandomSleepTime

sendAFPChainToServer

getTimeout

getPdbPairs

getRepresentatives