Class FarmJobParameters

java.lang.Object
org.biojava.nbio.structure.align.client.FarmJobParameters

public class FarmJobParameters extends Object
  • Field Details

  • Constructor Details

    • FarmJobParameters

      public FarmJobParameters()
  • Method Details

    • getPdbFilePath

      public String getPdbFilePath()
    • setPdbFilePath

      public void setPdbFilePath(String pdbFilePath)
    • getCacheFilePath

      public String getCacheFilePath()
    • setCacheFilePath

      public void setCacheFilePath(String cacheFilePath)
    • getNrAlignments

      public int getNrAlignments()
    • setNrAlignments

      public void setNrAlignments(int nrAlignments)
    • getTime

      public int getTime()
    • setTime

      public void setTime(int time)
    • getThreads

      public int getThreads()
    • setThreads

      public void setThreads(int threads)
    • getServer

      public String getServer()
    • setServer

      public void setServer(String server)
    • getUsername

      public String getUsername()
    • setUsername

      public void setUsername(String username)
    • isRunBackground

      public boolean isRunBackground()
      Flag if a job that only runs one parallell job should be run in its own thread or in the main thread. For User interface related apps should be set to true. Default: false;
      Returns:
      flag
    • setRunBackground

      public void setRunBackground(boolean runBackground)
    • getStepSize

      public int getStepSize()
      how many pairs should be requested for alignment from server?
      Returns:
      stepsize
    • setStepSize

      public void setStepSize(int stepSize)
    • isVerbose

      public boolean isVerbose()
      Flag if the job should be run in verbose mode. Default: false
      Returns:
      flag if the job should be run in verbose mode
    • setVerbose

      public void setVerbose(boolean verbose)
    • isUpdateRemediatedFiles

      public boolean isUpdateRemediatedFiles()
    • setUpdateRemediatedFiles

      public void setUpdateRemediatedFiles(boolean updateRemediatedFiles)
    • toString

      public String toString()
      Overrides:
      toString in class Object