org.biojava.nbio.structure.align.ce.CeSideChainMain

All Implemented Interfaces:: StructureAlignment

public class CeSideChainMain extends CeMain implements StructureAlignment

Field Summary

Fields

Modifier and Type

Field

Description

static final String

algorithmName

Fields inherited from class org.biojava.nbio.structure.align.ce.CeMain
calculator, params

Fields inherited from class org.biojava.nbio.structure.align.AbstractStructureAlignment
newline
Constructor Summary

Constructors

Constructor

Description

CeSideChainMain()
Method Summary

Modifier and Type

Method

Description

String

getAlgorithmName()

Get the name of the Algorithm

ConfigStrucAligParams

getParameters()

Return the paramers for this algorithm.

String

getVersion()

Get the Version information for this Algorithm.

static void

main(String[] args)

void

setParameters(ConfigStrucAligParams params)

Set the default parameters for this algorithm to use

Methods inherited from class org.biojava.nbio.structure.align.ce.CeMain
align, align, getCECalculator

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.nbio.structure.align.StructureAlignment
align, align

Field Details
- algorithmName
  
  public static final String algorithmName
  See Also:
  
  Constant Field Values
Constructor Details
- CeSideChainMain
  
  public CeSideChainMain()
Method Details
- main
  
  public static void main(String[] args) throws ConfigurationException
  
  Throws:
  
  ConfigurationException
- getAlgorithmName
  
  public String getAlgorithmName()
  
  Description copied from interface: StructureAlignment
  
  Get the name of the Algorithm
  
  Specified by:
  
  getAlgorithmName in interface StructureAlignment
  
  Overrides:
  
  getAlgorithmName in class CeMain
  
  Returns:
  
  the name of the algorithm
- getParameters
  
  public ConfigStrucAligParams getParameters()
  
  Description copied from interface: StructureAlignment
  
  Return the paramers for this algorithm.
  
  Specified by:
  
  getParameters in interface StructureAlignment
  
  Overrides:
  
  getParameters in class CeMain
  
  Returns:
  
  The returned object will be a Java bean.
- setParameters
  
  public void setParameters(ConfigStrucAligParams params)
  
  Description copied from interface: StructureAlignment
  
  Set the default parameters for this algorithm to use
  
  Specified by:
  
  setParameters in interface StructureAlignment
  
  Overrides:
  
  setParameters in class CeMain
- getVersion
  
  public String getVersion()
  
  Description copied from interface: StructureAlignment
  
  Get the Version information for this Algorithm.
  
  Specified by:
  
  getVersion in interface StructureAlignment
  
  Overrides:
  
  getVersion in class CeMain
  
  Returns:
  
  the version of the algorithm

Class CeSideChainMain

Field Summary

Fields inherited from class org.biojava.nbio.structure.align.ce.CeMain

Fields inherited from class org.biojava.nbio.structure.align.AbstractStructureAlignment

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.structure.align.ce.CeMain

Methods inherited from class java.lang.Object

Methods inherited from interface org.biojava.nbio.structure.align.StructureAlignment

Field Details

algorithmName

Constructor Details

CeSideChainMain

Method Details

main

getAlgorithmName

getParameters

setParameters

getVersion