Package org.biojava.nbio.structure.align

Class StructureAlignmentFactory

java.lang.Object
org.biojava.nbio.structure.align.StructureAlignmentFactory
public class StructureAlignmentFactory extends Object

  • Constructor Details

    • StructureAlignmentFactory

      public StructureAlignmentFactory()

  • Method Details

    • addAlgorithm

      public static void addAlgorithm(StructureAlignment alg)
      Adds a new StructureAlignment algorithm to the list. Only one instance is stored for each algorithmName, so it is possible that a different instance may be returned by getAlgorithm(alg.getAlgorithmName())
      Parameters:
      alg - the alignment algorithm

    • removeAlgorithm

      public static boolean removeAlgorithm(String name)
      Removes the specified algorithm from the list of options
      Parameters:
      name - the name of the algorithm to remove
      Returns:
      true if the specified algorithm was found and removed

    • clearAlgorithms

      public static void clearAlgorithms()
      Removes all algorithms from the list

    • getAlgorithm

      public static StructureAlignment getAlgorithm(String name) throws StructureException
      Throws:
      StructureException

    • getAllAlgorithms

      public static StructureAlignment[] getAllAlgorithms()

    • getAllAlgorithmNames

      public static String[] getAllAlgorithmNames()