Class PassthroughIdentifier

Method Details

• getIdentifier

  public String getIdentifier()

  Description copied from interface: StructureIdentifier

  Get the String form of this identifier. It is recommended that the #toString() method also return the identifier, for consistency during serialization.

  Specified by:

  getIdentifier in interface StructureIdentifier

  Returns:

  The String form of this identifier

• toCanonical

  public SubstructureIdentifier toCanonical()

  Description copied from interface: StructureIdentifier

  Convert to a canonical SubstructureIdentifier.

  This allows all domains to be converted to a standard format String.

  Specified by:

  toCanonical in interface StructureIdentifier

  Returns:

  A SubstructureIdentifier without ranges (e.g. including all residues)

• reduce

  public Structure reduce(Structure input) throws StructureException

  Description copied from interface: StructureIdentifier

  Takes a complete structure as input and reduces it to the substructure represented by this StructureIdentifier.

  The returned structure may be a shallow copy of the input, with shared Chains, Residues, etc.

  Specified by:

  reduce in interface StructureIdentifier

  Parameters:

  input - A full structure, e.g. as loaded from the PDB. The structure ID should match that returned by getPdbId(), if applicable.

  Returns:

  Throws:

  StructureException

  See Also:

  • StructureTools.getReducedStructure(Structure, String)

• loadStructure

  public Structure loadStructure(AtomCache cache) throws StructureException, IOException

  Passthrough identifiers don't know how to load a structure

  Specified by:

  loadStructure in interface StructureIdentifier

  Returns:

  null

  Throws:

  StructureException - For errors loading and parsing the structure

  IOException - Errors reading the structure from disk