Class ProteinModificationImpl

Method Details

• getId

  public String getId()

  Specified by:

  getId in interface ProteinModification

  Returns:

  modification id.

• getPdbccId

  public String getPdbccId()

  Specified by:

  getPdbccId in interface ProteinModification

  Returns:

  Protein Data Bank Chemical Component ID.

• getPdbccName

  public String getPdbccName()

  Specified by:

  getPdbccName in interface ProteinModification

  Returns:

  Protein Data Bank Chemical Component name.

• getResidId

  public String getResidId()

  Specified by:

  getResidId in interface ProteinModification

  Returns:

  RESID ID.

• getResidName

  public String getResidName()

  Specified by:

  getResidName in interface ProteinModification

  Returns:

  RESID name.

• getPsimodId

  public String getPsimodId()

  Specified by:

  getPsimodId in interface ProteinModification

  Returns:

  PSI-MOD ID.

• getPsimodName

  public String getPsimodName()

  Specified by:

  getPsimodName in interface ProteinModification

  Returns:

  PSI-MOD name.

• getSystematicName

  public String getSystematicName()

  Specified by:

  getSystematicName in interface ProteinModification

  Returns:

  Systematic name.

• getDescription

  public String getDescription()

  Specified by:

  getDescription in interface ProteinModification

  Returns:

  Description.

• getKeywords

  public Set<String> getKeywords()

  Specified by:

  getKeywords in interface ProteinModification

  Returns:

  a set of keywords.

• getCondition

  public ModificationCondition getCondition()

  Specified by:

  getCondition in interface ProteinModification

  Returns:

  ModificationCondition

• getFormula

  public String getFormula()

  Specified by:

  getFormula in interface ProteinModification

  Returns:

  formula of the modified residue.

• getCategory

  public ModificationCategory getCategory()

  Specified by:

  getCategory in interface ProteinModification

  Returns:

  the modification category.

• getOccurrenceType

  public ModificationOccurrenceType getOccurrenceType()

  Specified by:

  getOccurrenceType in interface ProteinModification

  Returns:

  the modification occurrence type.

• toString

  public String toString()

  Overrides:

  toString in class Object

• hashCode

  public int hashCode()

  Overrides:

  hashCode in class Object

• equals

  public boolean equals(Object obj)

  Overrides:

  equals in class Object

• compareTo

  public int compareTo(ProteinModification arg0)

  Specified by:

  compareTo in interface Comparable<ProteinModification>