Package org.biojava.nbio.protmod

Interface ProteinModification

All Known Implementing Classes:
ProteinModificationImpl
public interface ProteinModification
This interface defines information about a specific protein modification.
Since:
3.0
Author:
Jianjiong Gao

  • Method Details

    • getId

      String getId()
      Returns:
      modification id.

    • getPdbccId

      String getPdbccId()
      Returns:
      Protein Data Bank Chemical Component ID.

    • getPdbccName

      String getPdbccName()
      Returns:
      Protein Data Bank Chemical Component name.

    • getResidId

      String getResidId()
      Returns:
      RESID ID.

    • getResidName

      String getResidName()
      Returns:
      RESID name.

    • getPsimodId

      String getPsimodId()
      Returns:
      PSI-MOD ID.

    • getPsimodName

      String getPsimodName()
      Returns:
      PSI-MOD name.

    • getSystematicName

      String getSystematicName()
      Returns:
      Systematic name.

    • getDescription

      String getDescription()
      Returns:
      Description.

    • getKeywords

      Set<String> getKeywords()
      Returns:
      a set of keywords.

    • getCondition

      ModificationCondition getCondition()
      Returns:
      ModificationCondition

    • getFormula

      String getFormula()
      Returns:
      formula of the modified residue.

    • getCategory

      ModificationCategory getCategory()
      Returns:
      the modification category.

    • getOccurrenceType

      ModificationOccurrenceType getOccurrenceType()
      Returns:
      the modification occurrence type.