OutputHitsGFF

java.lang.Object

org.biojava.nbio.genome.query.OutputHitsGFF

public class OutputHitsGFF extends Object

Author:: Scooter Willis

Constructor Summary

Constructors

Constructor

Description

OutputHitsGFF()
Method Summary

Modifier and Type

Method

Description

static void

main(String[] args)

void

process(File blastXMLFile, File gffFile, File gffOutputFile, double maxEScore, double percentageAligned, boolean includeFrameShift, boolean includeNegativeStrand)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- OutputHitsGFF
  
  public OutputHitsGFF()
Method Details
- process
  
  public void process(File blastXMLFile, File gffFile, File gffOutputFile, double maxEScore, double percentageAligned, boolean includeFrameShift, boolean includeNegativeStrand) throws Exception
  
  Throws:
  
  Exception
- main
  
  public static void main(String[] args)