Package org.biojava.nbio.genome.parsers.gff

package org.biojava.nbio.genome.parsers.gff
  • Class
    Description
    Feature
    A Feature corresponds to a single row in a GFF file.
    FeatureHelper
     
    FeatureI
    A feature on a sequence (for example, an exon or a gene), defined by a location and a set of attributes encoded as key/value pairs.
    FeatureList
    A list of FeatureI objects implemented using a Java ArrayList; corresponds to a GFF file.
    GCStats
     
    GeneIDGFF2Reader
    http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
    GeneMarkGTFReader
    http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
    GFF3Reader
    http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
    GFF3Writer
     
    Location
    A location on a sequence.
    LocIterator
    Move a sliding window over a Location.