GeneIDXMLReader

java.lang.Object

org.biojava.nbio.genome.parsers.geneid.GeneIDXMLReader

public class GeneIDXMLReader extends Object

Author:: Scooter Willis

Constructor Summary

Constructors

Constructor

Description

GeneIDXMLReader(String geneidXMLFile)
Method Summary

Modifier and Type

Method

Description

LinkedHashMap<String,DNASequence>

getDNACodingSequences()

LinkedHashMap<String,ProteinSequence>

getProteinSequences()

static void

main(String[] args)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- GeneIDXMLReader
  
  public GeneIDXMLReader(String geneidXMLFile) throws Exception
  
  Throws:
  
  Exception
Method Details
- getProteinSequences
  
  public LinkedHashMap<String,ProteinSequence> getProteinSequences() throws Exception
  
  Throws:
  
  Exception
- getDNACodingSequences
  
  public LinkedHashMap<String,DNASequence> getDNACodingSequences() throws Exception
  
  Throws:
  
  Exception
- main
  
  public static void main(String[] args)