Package org.biojava.nbio.core.sequence.transcription
package org.biojava.nbio.core.sequence.transcription
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ClassDescriptionAttempts to wrap compounds so it is possible to view them in a case insensitive mannerPerforms the first stage of transcription by going from DNA to RNA.Indicates a way of translating a sequence.Takes a
SequenceofNucleotideCompoundwhich should represent an RNA sequence (RNASequenceis good for this) and returns a list ofSequencewhich holdAminoAcidCompound.Provides a way of separating us from the specificIUPACParser.IUPACTableeven though this is the only implementing class for the interface.Class used to hold three nucleotides together and allow for equality to be assessed in a case insensitive manner.Instance of a Codon which is 3NucleotideCompounds, its correspondingAminoAcidCompoundand if it is a start or stop codon.Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence.This class is the way to create aTranslationEngine.