org.biojava.nbio.core.sequence.transcription.Table.Codon

All Implemented Interfaces:: Compound

Enclosing interface:: Table

public static class Table.Codon extends Object implements Compound

Instance of a Codon which is 3 NucleotideCompounds, its corresponding AminoAcidCompound and if it is a start or stop codon. The object implements hashCode & equals but according to the nucleotide compounds & not to the designation of it being a start, stop & amino acid compound

Author:: ayates

Constructor Summary

Constructors

Constructor

Description

Codon(Table.CaseInsensitiveTriplet triplet)

Codon(Table.CaseInsensitiveTriplet triplet, AminoAcidCompound aminoAcid, boolean start, boolean stop)
Method Summary

Modifier and Type

Method

Description

boolean

equals(Object obj)

boolean

equalsIgnoreCase(Compound compound)

AminoAcidCompound

getAminoAcid()

String

getDescription()

String

getLongName()

Float

getMolecularWeight()

NucleotideCompound

getOne()

String

getShortName()

NucleotideCompound

getThree()

Table.CaseInsensitiveTriplet

getTriplet()

NucleotideCompound

getTwo()

int

hashCode()

boolean

isStart()

boolean

isStop()

void

setDescription(String description)

void

setLongName(String longName)

void

setMolecularWeight(Float molecularWeight)

void

setShortName(String shortName)

String

toString()

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details
- Codon
  
  public Codon(Table.CaseInsensitiveTriplet triplet, AminoAcidCompound aminoAcid, boolean start, boolean stop)
- Codon
  
  public Codon(Table.CaseInsensitiveTriplet triplet)
Method Details
- getOne
  
  public NucleotideCompound getOne()
- getTwo
  
  public NucleotideCompound getTwo()
- getThree
  
  public NucleotideCompound getThree()
- isStart
  
  public boolean isStart()
- isStop
  
  public boolean isStop()
- getAminoAcid
  
  public AminoAcidCompound getAminoAcid()
- getTriplet
  
  public Table.CaseInsensitiveTriplet getTriplet()
- equals
  
  public boolean equals(Object obj)
  
  Overrides:
  
  equals in class Object
- hashCode
  
  public int hashCode()
  
  Overrides:
  
  hashCode in class Object
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object
- equalsIgnoreCase
  
  public boolean equalsIgnoreCase(Compound compound)
  
  Specified by:
  
  equalsIgnoreCase in interface Compound
- getDescription
  
  public String getDescription()
  
  Specified by:
  
  getDescription in interface Compound
- getLongName
  
  public String getLongName()
  
  Specified by:
  
  getLongName in interface Compound
- getMolecularWeight
  
  public Float getMolecularWeight()
  
  Specified by:
  
  getMolecularWeight in interface Compound
- getShortName
  
  public String getShortName()
  
  Specified by:
  
  getShortName in interface Compound
- setDescription
  
  public void setDescription(String description)
  
  Specified by:
  
  setDescription in interface Compound
- setLongName
  
  public void setLongName(String longName)
  
  Specified by:
  
  setLongName in interface Compound
- setMolecularWeight
  
  public void setMolecularWeight(Float molecularWeight)
  
  Specified by:
  
  setMolecularWeight in interface Compound
- setShortName
  
  public void setShortName(String shortName)
  
  Specified by:
  
  setShortName in interface Compound

Class Table.Codon

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

Codon

Codon

Method Details

getOne

getTwo

getThree

isStart

isStop

getAminoAcid

getTriplet

equals

hashCode

toString

equalsIgnoreCase

getDescription

getLongName

getMolecularWeight

getShortName

setDescription

setLongName

setMolecularWeight

setShortName