Package org.biojava.nbio.core.sequence.template
package org.biojava.nbio.core.sequence.template
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ClassDescriptionThe details of a CompoundAbstractCompoundSet<C extends Compound>AbstractNucleotideCompoundSet<C extends NucleotideCompound>AbstractSequence<C extends Compound>The base class for DNA, RNA and Protein sequences.Indicates an entity is accessionedCompoundSet<C extends Compound>Defines a minimal data structure for reading and writing a sequence alignment.List of output formats.ProxySequenceReader<C extends Compound>Main interface for defining a collection of Compounds and accessing them using biological indexesProvides a set of static methods to be used as static imports when needed across multiple Sequence implementations but inheritance gets in the way.SequenceMixin.SequenceIterator<C extends Compound>A basic sequence iterator which iterates over the given Sequence by biological index.SequenceProxyView<C extends Compound>SequenceReader<C extends Compound>SequenceView<C extends Compound>