SequenceView

All Superinterfaces:: Accessioned, Iterable<C>, Sequence<C>

All Known Implementing Classes:: ComplementSequenceView, ReversedSequenceView, RnaSequenceView, SequenceProxyView

public interface SequenceView<C extends Compound> extends Sequence<C>

Method Summary

Modifier and Type

Method

Description

Integer

getBioEnd()

1-indexed, inclusive.

Integer

getBioStart()

1-indexed, inclusive.

Sequence<C>

getViewedSequence()

Methods inherited from interface org.biojava.nbio.core.sequence.template.Accessioned
getAccession

Methods inherited from interface java.lang.Iterable
forEach, iterator, spliterator

Methods inherited from interface org.biojava.nbio.core.sequence.template.Sequence
countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Method Details
- getViewedSequence
  
  Sequence<C> getViewedSequence()
- getBioStart
  
  Integer getBioStart()
  
  1-indexed, inclusive.
- getBioEnd
  
  Integer getBioEnd()
  
  1-indexed, inclusive.