Package org.biojava.nbio.core.sequence.storage

Class SequenceAsStringHelper<C extends Compound>

java.lang.Object
org.biojava.nbio.core.sequence.storage.SequenceAsStringHelper<C>
public class SequenceAsStringHelper<C extends Compound> extends Object
This is a common method that can be used across multiple storage/proxy implementations to handle Negative strand and other interesting elements of sequence data.
Author:
Scooter Willis

  • Constructor Details

    • SequenceAsStringHelper

      public SequenceAsStringHelper()

  • Method Details

    • getSequenceAsString

      public String getSequenceAsString(List<C> parsedCompounds, CompoundSet<C> compoundSet, Integer bioBegin, Integer bioEnd, Strand strand)
      Parameters:
      parsedCompounds -
      compoundSet -
      bioBegin -
      bioEnd -
      strand -
      Returns: