Interface AccesionedLocation
- All Superinterfaces:
Accessioned,Iterable<Location>,Location
A location which is bound to an AccessionID. This is common in
INSDC locations where a location actually points to a remote sequence. This
is especially common in records describing Genomic sequence assembly.
- Author:
- ayates
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Nested Class Summary
Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Location
Location.Tools -
Field Summary
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Method Summary
Modifier and TypeMethodDescriptionProxySequenceReader<? extends Compound>Return the proxy reader used to get sequence for this location.Methods inherited from interface org.biojava.nbio.core.sequence.template.Accessioned
getAccessionMethods inherited from interface java.lang.Iterable
forEach, iterator, spliteratorMethods inherited from interface org.biojava.nbio.core.sequence.location.template.Location
getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, isBetweenCompounds, isCircular, isComplex
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Method Details
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getProxySequenceReader
ProxySequenceReader<? extends Compound> getProxySequenceReader()Return the proxy reader used to get sequence for this location. We assume that AccessionID is bound to the instance to facilitate this lookup.
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