org.biojava.nbio.core.sequence.location.InsdcLocations.GroupLocation

All Implemented Interfaces:: Serializable, Iterable<Location>, Location, Accessioned

Enclosing class:: InsdcLocations

public static class InsdcLocations.GroupLocation extends SimpleLocation

Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined. The constructor reflects this relationship and only allows the creation of complex locations

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Location
Location.Tools
Field Summary

Fields inherited from interface org.biojava.nbio.core.sequence.location.template.Location
EMPTY
Constructor Summary

Constructors

Constructor

Description

GroupLocation(int start, int end, Strand strand, List<Location> subLocations)

GroupLocation(int start, int end, Strand strand, Location... subLocations)

GroupLocation(List subLocations)

GroupLocation(Location... subLocations)

GroupLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations)

GroupLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)

GroupLocation(Point start, Point end, Strand strand, List<Location> subLocations)

GroupLocation(Point start, Point end, Strand strand, Location... subLocations)
Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.location.template.AbstractLocation
assertLocation, canComplement, equals, getAccession, getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, hashCode, isBetweenCompounds, isCircular, isComplex, isPartial, isPartialOn3prime, isPartialOn5prime, iterator, reverseSequence, setAccession, setBetweenCompounds, setCircular, setEnd, setPartialOn3prime, setPartialOn5prime, setStart, setStrand, setSubLocations, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Constructor Details
- GroupLocation
  
  public GroupLocation(List subLocations)
- GroupLocation
  
  public GroupLocation(Location... subLocations)
- GroupLocation
  
  public GroupLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)
- GroupLocation
  
  public GroupLocation(Point start, Point end, Strand strand, Location... subLocations)
- GroupLocation
  
  public GroupLocation(int start, int end, Strand strand, Location... subLocations)
- GroupLocation
  
  public GroupLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations)
- GroupLocation
  
  public GroupLocation(Point start, Point end, Strand strand, List<Location> subLocations)
- GroupLocation
  
  public GroupLocation(int start, int end, Strand strand, List<Location> subLocations)

Class InsdcLocations.GroupLocation

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Location

Field Summary

Fields inherited from interface org.biojava.nbio.core.sequence.location.template.Location

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.location.template.AbstractLocation

Methods inherited from class java.lang.Object

Methods inherited from interface java.lang.Iterable

Constructor Details

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation