SequenceCreatorInterface

All Known Implementing Classes:: CasePreservingProteinSequenceCreator, DNASequenceCreator, FileProxyDNASequenceCreator, FileProxyProteinSequenceCreator, ProteinSequenceCreator, RNASequenceCreator

public interface SequenceCreatorInterface<C extends Compound>

Author:: Scooter Willis

Method Summary

Modifier and Type

Method

Description

AbstractSequence<C>

getSequence(String sequence, long index)

AbstractSequence<C>

getSequence(List<C> list)

AbstractSequence<C>

getSequence(ProxySequenceReader<C> proxyLoader, long index)

Method Details
- getSequence
  
  AbstractSequence<C> getSequence(String sequence, long index) throws CompoundNotFoundException, IOException
  
  Parameters:
  
  sequence -
  
  index -
  
  Returns:
  
  Throws:
  
  CompoundNotFoundException
  
  IOException
- getSequence
  
  AbstractSequence<C> getSequence(ProxySequenceReader<C> proxyLoader, long index)
  
  Parameters:
  
  proxyLoader -
  
  index -
  
  Returns:
- getSequence
  
  AbstractSequence<C> getSequence(List<C> list)
  
  Parameters:
  
  list -
  
  Returns: