org.biojava.nbio.core.sequence.io.GenericGenbankHeaderParser<S,C>

public class GenericGenbankHeaderParser<S extends AbstractSequence<C>,C extends Compound> extends Object implements SequenceHeaderParserInterface<S,C>

Constructor Details
- GenericGenbankHeaderParser
  
  public GenericGenbankHeaderParser()
Method Details
- parseHeader
  
  public void parseHeader(String header, S sequence)
  
  Parse the header and set the values in the sequence
  
  Specified by:
  
  parseHeader in interface SequenceHeaderParserInterface<S extends AbstractSequence<C>,C extends Compound>
  
  Parameters:
  
  header -
  
  sequence -
- setVersion
  
  public void setVersion(int version) throws ParserException
  
  Throws:
  
  ParserException
- setAccession
  
  public void setAccession(String accession) throws ParserException
  
  The last accession passed to this routine will always be the one used.
  
  Throws:
  
  ParserException
- setDescription
  
  public void setDescription(String description) throws ParserException
  
  Throws:
  
  ParserException
- setIdentifier
  
  public void setIdentifier(String identifier) throws ParserException
  
  Throws:
  
  ParserException
- setName
  
  public void setName(String name) throws ParserException
  
  Throws:
  
  ParserException
- setComment
  
  public void setComment(String comment) throws ParserException
  
  Throws:
  
  ParserException

Class GenericGenbankHeaderParser<S extends AbstractSequence<C>,C extends Compound>

Constructor Summary