Package org.biojava.nbio.core.sequence.io

Class GenericFastaHeaderFormat<S extends AbstractSequence<?>,C extends Compound>

java.lang.Object
org.biojava.nbio.core.sequence.io.GenericFastaHeaderFormat<S,C>
All Implemented Interfaces:
FastaHeaderFormatInterface<S,C>
public class GenericFastaHeaderFormat<S extends AbstractSequence<?>,C extends Compound> extends Object implements FastaHeaderFormatInterface<S,C>
We store the original header if the sequence is parsed from a fasta file and will use that exact sequence if we write out the sequences to a fasta file. If we don't have an orginal header then use the accession id. This allows the implementation by the user to write out complex header with id notes etc without rewriting the fasta writer
Author:
Scooter Willis