FastaSequenceParser

java.lang.Object

org.biojava.nbio.core.sequence.io.FastaSequenceParser

All Implemented Interfaces:: SequenceParserInterface

public class FastaSequenceParser extends Object implements SequenceParserInterface

Used to parse a stream of a fasta file to get the sequence

Author:: Scooter Willis

Constructor Summary

Constructors

Constructor

Description

FastaSequenceParser()
Method Summary

Modifier and Type

Method

Description

String

getSequence(BufferedReader bufferedReader, int sequenceLength)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- FastaSequenceParser
  
  public FastaSequenceParser()
Method Details
- getSequence
  
  public String getSequence(BufferedReader bufferedReader, int sequenceLength) throws IOException
  
  Specified by:
  
  getSequence in interface SequenceParserInterface
  
  Returns:
  
  Throws:
  
  IOException