Package org.biojava.nbio.core.sequence.features

Class DBReferenceInfo

java.lang.Object
org.biojava.nbio.core.sequence.features.Qualifier
org.biojava.nbio.core.sequence.features.DBReferenceInfo
Direct Known Subclasses:
FeatureDbReferenceInfo
public class DBReferenceInfo extends Qualifier
If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by. This is a place holder for the alternative source database and the id for the same protein. Currently implement when the UniprotProxySequenceReader is used to load a protein sequence
Author:
Scooter Willis , Paolo Pavan

  • Constructor Details

    • DBReferenceInfo

      public DBReferenceInfo(String database, String id)
      The source database and id
      Parameters:
      database -
      id -

  • Method Details

    • addProperty

      public void addProperty(String type, String value)
      Add a property and type to associate with this DBReferenceInfo
      Parameters:
      type -
      value -

    • getProperties

      public LinkedHashMap<String,String> getProperties()
      Get the properties
      Returns:
      the properties

    • setProperties

      public void setProperties(LinkedHashMap<String,String> properties)
      Parameters:
      properties - the properties to set

    • getDatabase

      public String getDatabase()
      Returns:
      the database

    • setDatabase

      public void setDatabase(String database)
      Parameters:
      database - the database to set

    • getId

      public String getId()
      Returns:
      the id

    • setId

      public void setId(String id)
      Parameters:
      id - the id to set

    • toString

      public String toString()
      Overrides:
      toString in class Qualifier