Package org.biojava.nbio.core.sequence.edits

package org.biojava.nbio.core.sequence.edits
  • Class
    Description
    Edit<C extends Compound>
    Interface for carrying out edit operations on a Sequence.
    Edit.AbstractEdit<C extends Compound>
    Abstract class which defines all edit operations as a call to discover what 5' and 3' ends of an editing Sequence should be joined together with a target Sequence.
    Edit.Delete<C extends Compound>
    Implementation which allows for the deletion of bases from a Sequence
    Edit.Insert<C extends Compound>
    Edit implementation which allows us to insert a base at any position in a Sequence.
    Edit.Substitute<C extends Compound>
    Allows for the substitution of bases into an existing Sequence.