DNACompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.DNACompoundSet

All Implemented Interfaces:: CompoundSet<NucleotideCompound>

Direct Known Subclasses:: AmbiguityDNACompoundSet, AmbiguityDNARNAHybridCompoundSet

public class DNACompoundSet extends AbstractNucleotideCompoundSet<NucleotideCompound>

Author:: Andy Yates

Constructor Summary

Constructors

Constructor

Description

DNACompoundSet()
Method Summary

Modifier and Type

Method

Description

static DNACompoundSet

getDNACompoundSet()

NucleotideCompound

newNucleotideCompound(String base, String complement, String... equivalents)

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- DNACompoundSet
  
  public DNACompoundSet()
Method Details
- getDNACompoundSet
  
  public static DNACompoundSet getDNACompoundSet()
- newNucleotideCompound
  
  public NucleotideCompound newNucleotideCompound(String base, String complement, String... equivalents)
  
  Specified by:
  
  newNucleotideCompound in class AbstractNucleotideCompoundSet<NucleotideCompound>