AmbiguityDNARNAHybridCompoundSet

java.lang.Object

org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>

org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>

org.biojava.nbio.core.sequence.compound.DNACompoundSet

org.biojava.nbio.core.sequence.compound.AmbiguityDNARNAHybridCompoundSet

All Implemented Interfaces:: CompoundSet<NucleotideCompound>

public class AmbiguityDNARNAHybridCompoundSet extends DNACompoundSet

Ambiguity set for hybrid DNA/RNA sequences. Needed for some instances of synthetic nucleotide sequences present in protein structures from the PDB.

Author:: Jose Duarte

Constructor Summary

Constructors

Constructor

Description

AmbiguityDNARNAHybridCompoundSet()
Method Summary

Modifier and Type

Method

Description

static AmbiguityDNARNAHybridCompoundSet

getDNARNAHybridCompoundSet()

Methods inherited from class org.biojava.nbio.core.sequence.compound.DNACompoundSet
getDNACompoundSet, newNucleotideCompound

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable

Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- AmbiguityDNARNAHybridCompoundSet
  
  public AmbiguityDNARNAHybridCompoundSet()
Method Details
- getDNARNAHybridCompoundSet
  
  public static AmbiguityDNARNAHybridCompoundSet getDNARNAHybridCompoundSet()