org.biojava.nbio.core.search.io.blast.BlastResult

All Implemented Interfaces:: Iterable<Hit>

public class BlastResult extends Result

This class models a Blast/Blast plus result. You will find one of this for every query sequence specified in the run. Designed by Paolo Pavan. You may want to find my contacts on Github and LinkedIn for code info or discuss major changes. https://github.com/paolopavan

Author:: Paolo Pavan

Constructor Summary

Constructors

Constructor

Description

BlastResult(String program, String version, String reference, String dbFile, HashMap<String,String> programSpecificParameters, int iterationNumber, String queryID, String queryDef, int queryLength, List<Hit> hits, Sequence querySequence)
Method Summary

Methods inherited from class org.biojava.nbio.core.search.io.Result
equals, getDbFile, getHitCounter, getIterationNumber, getProgram, getProgramSpecificParameter, getProgramSpecificParametersList, getQueryDef, getQueryID, getQueryLength, getQuerySequence, getReference, getVersion, hashCode, iterator

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Constructor Details
- BlastResult
  
  public BlastResult(String program, String version, String reference, String dbFile, HashMap<String,String> programSpecificParameters, int iterationNumber, String queryID, String queryDef, int queryLength, List<Hit> hits, Sequence querySequence)

Class BlastResult

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.search.io.Result

Methods inherited from class java.lang.Object

Methods inherited from interface java.lang.Iterable

Constructor Details

BlastResult