org.biojava.nbio.core.alignment.template Class Hierarchy

Interface Hierarchy

org.biojava.nbio.core.sequence.template.Accessioned
- org.biojava.nbio.core.sequence.template.Sequence<C> (also extends java.lang.Iterable<T>)
  - org.biojava.nbio.core.alignment.template.AlignedSequence<S,C>
    - org.biojava.nbio.core.alignment.template.MutableAlignedSequence<S,C>
java.lang.Iterable<T>
- org.biojava.nbio.core.alignment.template.Profile<S,C>
  - org.biojava.nbio.core.alignment.template.MutableProfile<S,C>
    - org.biojava.nbio.core.alignment.template.MutableProfilePair<S,C> (also extends org.biojava.nbio.core.alignment.template.ProfilePair<S,C>)
    - org.biojava.nbio.core.alignment.template.MutableSequencePair<S,C> (also extends org.biojava.nbio.core.alignment.template.SequencePair<S,C>)
  - org.biojava.nbio.core.alignment.template.ProfilePair<S,C>
    - org.biojava.nbio.core.alignment.template.MutableProfilePair<S,C> (also extends org.biojava.nbio.core.alignment.template.MutableProfile<S,C>)
  - org.biojava.nbio.core.alignment.template.ProfileView<S,C>
  - org.biojava.nbio.core.alignment.template.SequencePair<S,C>
    - org.biojava.nbio.core.alignment.template.MutableSequencePair<S,C> (also extends org.biojava.nbio.core.alignment.template.MutableProfile<S,C>)
- org.biojava.nbio.core.sequence.template.Sequence<C> (also extends org.biojava.nbio.core.sequence.template.Accessioned)
  - org.biojava.nbio.core.alignment.template.AlignedSequence<S,C>
    - org.biojava.nbio.core.alignment.template.MutableAlignedSequence<S,C>
org.biojava.nbio.core.alignment.template.SubstitutionMatrix<C>

Enum Class Hierarchy

java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
  - org.biojava.nbio.core.alignment.template.AlignedSequence.Step
  - org.biojava.nbio.core.alignment.template.Profile.StringFormat

Hierarchy For Package org.biojava.nbio.core.alignment.template

Interface Hierarchy

Enum Class Hierarchy