org.biojava.nbio.core.alignment

package org.biojava.nbio.core.alignment

Related Packages

Package

Description

org.biojava.nbio.core.alignment.matrices

org.biojava.nbio.core.alignment.template
Classes

Class

Description

SimpleAlignedSequence<S extends Sequence<C>,C extends Compound>

Implements a data structure for a Sequence within an alignment.

SimpleProfile<S extends Sequence<C>,C extends Compound>

Implements a data structure for the results of sequence alignment.

SimpleProfilePair<S extends Sequence<C>,C extends Compound>

Implements a data structure for the results of the alignment of a pair of Profiles.

SimpleSequencePair<S extends Sequence<C>,C extends Compound>

Implements a data structure for the results of pairwise sequence alignment.