org.biojava.nbio.alignment.routines Class Hierarchy

Class Hierarchy

java.lang.Object
- org.biojava.nbio.alignment.template.AbstractScorer (implements org.biojava.nbio.alignment.template.Scorer)
  - org.biojava.nbio.alignment.template.AbstractMatrixAligner<S,C> (implements org.biojava.nbio.alignment.template.MatrixAligner<S,C>)
    - org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner<S,C> (implements org.biojava.nbio.alignment.template.PairwiseSequenceAligner<S,C>)
      - org.biojava.nbio.alignment.routines.AnchoredPairwiseSequenceAligner<S,C>
        
        org.biojava.nbio.alignment.routines.GuanUberbacher<S,C>
- org.biojava.nbio.alignment.routines.AlignerHelper
- org.biojava.nbio.alignment.routines.AlignerHelper.Anchor
- org.biojava.nbio.alignment.routines.AlignerHelper.Anchor.QueryIndexComparator (implements java.util.Comparator<T>)
- org.biojava.nbio.alignment.routines.AlignerHelper.Cut
- org.biojava.nbio.alignment.routines.AlignerHelper.Subproblem

Enum Class Hierarchy

java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
  - org.biojava.nbio.alignment.routines.AlignerHelper.Last