elastix Namespace Reference

Data Structures
class	AdaGrad
class	AdaptiveStochasticGradientDescent
class	AdaptiveStochasticLBFGS
class	AdaptiveStochasticVarianceReducedGradient
class	AdvancedAffineTransformElastix
class	AdvancedBSplineTransform
class	AdvancedKappaStatisticMetric
class	AdvancedMattesMutualInformationMetric
class	AdvancedMeanSquaresMetric
class	AdvancedNormalizedCorrelationMetric
class	AffineDTITransformElastix
class	AffineLogStackTransform
class	AffineLogTransformElastix
class	BaseComponent
class	BaseComponentSE
class	BSplineInterpolator
class	BSplineInterpolatorFloat
class	BSplineResampleInterpolator
class	BSplineResampleInterpolatorFloat
class	BSplineStackTransform
class	BSplineTransformWithDiffusion
class	CMAEvolutionStrategy
class	ComponentDatabase
class	ComponentLoader
class	Configuration
class	ConjugateGradient
class	ConjugateGradientFRPR
class	CorrespondingPointsEuclideanDistanceMetric
class	DeformationFieldTransform
class	DisplacementMagnitudePenalty
class	DistancePreservingRigidityPenalty
class	ELASTIX
class	ElastixBase
class	ElastixFilter
class	ElastixMain
class	ElastixTemplate
class	EulerStackTransform
class	EulerTransformElastix
class	FiniteDifferenceGradientDescent
class	FixedGenericPyramid
class	FixedImagePyramidBase
class	FixedRecursivePyramid
class	FixedShrinkingPyramid
class	FixedSmoothingPyramid
class	FullSampler
class	FullSearch
class	GradientDifferenceMetric
class	GridSampler
class	ImageSamplerBase
class	InstallFunctions
class	InterpolatorBase
class	KNNGraphAlphaMutualInformationMetric
class	LinearInterpolator
class	LinearResampleInterpolator
class	MetricBase
class	MissingStructurePenalty
class	MovingGenericPyramid
class	MovingImagePyramidBase
class	MovingRecursivePyramid
class	MovingShrinkingPyramid
class	MovingSmoothingPyramid
class	MultiBSplineTransformWithNormal
class	MultiInputRandomCoordinateSampler
class	MultiMetricMultiResolutionRegistration
class	MultiResolutionRegistration
class	MultiResolutionRegistrationWithFeatures
class	MutualInformationHistogramMetric
class	MyStandardResampler
class	NearestNeighborInterpolator
class	NearestNeighborResampleInterpolator
class	NormalizedGradientCorrelationMetric
class	NormalizedMutualInformationMetric
class	OpenCLFixedGenericPyramid
class	OpenCLMovingGenericPyramid
class	OpenCLResampler
class	OptimizerBase
class	ParameterObject
class	PatternIntensityMetric
class	PCAMetric
class	PCAMetric2
struct	PixelType
struct	PixelType< char >
struct	PixelType< double >
struct	PixelType< float >
struct	PixelType< int >
struct	PixelType< long >
struct	PixelType< short >
struct	PixelType< unsigned char >
struct	PixelType< unsigned int >
struct	PixelType< unsigned long >
struct	PixelType< unsigned short >
class	PolydataDummyPenalty
class	Powell
class	PreconditionedGradientDescent
class	PreconditionedStochasticGradientDescent
class	ProgressCommand
class	QuasiNewtonLBFGS
class	RandomCoordinateSampler
class	RandomSampler
class	RandomSamplerSparseMask
class	RayCastInterpolator
class	RayCastResampleInterpolator
class	RecursiveBSplineTransform
class	ReducedDimensionBSplineInterpolator
class	ReducedDimensionBSplineResampleInterpolator
class	RegistrationBase
class	RegularStepGradientDescent
class	ResampleInterpolatorBase
class	ResamplerBase
class	RSGDEachParameterApart
class	SimilarityTransformElastix
class	Simplex
class	SimultaneousPerturbation
class	SplineKernelTransform
class	StandardGradientDescent
class	StatisticalShapePenalty
class	SumOfPairwiseCorrelationCoefficientsMetric
class	SumSquaredTissueVolumeDifferenceMetric
class	TransformBase
class	TransformBendingEnergyPenalty
class	TransformixFilter
class	TransformixMain
class	TransformRigidityPenalty
class	TranslationStackTransform
class	TranslationTransformElastix
class	VarianceOverLastDimensionMetric
class	ViolaWellsMutualInformationMetric
class	WeightedCombinationTransformElastix

Functions
	elxPrepareImageTypeSupportMacro ()
	elxSupportedImageTypeMacro (float, 2, float, 2, 1)
	elxSupportedImageTypeMacro (float, 3, float, 3, 3)
	elxSupportedImageTypeMacro (short, 3, short, 3, 2)
	elxSupportedImageTypeMacro (short, 4, short, 4, 4)
int	xoutSetup (const char *logfilename, bool setupLogging, bool setupCout)

Variables
const unsigned int	NrOfSupportedImageTypes = 4

Detailed Description

Include itk transforms needed.

Include structure for the diffusion.

Include itk transforms needed. Include grid schedule computer and upsample filter.

Needed for the macros

Needed for the macros.

Needed for the macros Mask support.

******************* elxBaseComponent.h *************************

This file defines the class elx::BaseComponent, from which all elastix components should inherit. It contains some methods that each component is supposed to have.

The namespace alias elx is defined in this file.

Some header files are included that most components need. Get rid of warnings about too long variable names. All elastix components should be in namespace elastix.

Function Documentation

elxPrepareImageTypeSupportMacro()

elastix::elxPrepareImageTypeSupportMacro

(

)

elxSupportedImageTypeMacro() [1/4]

elastix::elxSupportedImageTypeMacro	(	float	,
		2	,
		float	,
		2	,
		1
	)

elxSupportedImageTypeMacro() [2/4]

elastix::elxSupportedImageTypeMacro	(	float	,
		3	,
		float	,
		3	,
		3
	)

elxSupportedImageTypeMacro() [3/4]

elastix::elxSupportedImageTypeMacro	(	short	,
		3	,
		short	,
		3	,
		2
	)

elxSupportedImageTypeMacro() [4/4]

elastix::elxSupportedImageTypeMacro	(	short	,
		4	,
		short	,
		4	,
		4
	)

xoutSetup()

int elastix::xoutSetup	(	const char *	logfilename,
		bool	setupLogging,
		bool	setupCout
	)

********************** Global Functions **********************

NB: not part of the ElastixMain class. function xoutSetup Configure the xl::xout variable, which has to be used for for writing messages. The function adds some default fields, such as "warning", "error", "standard", "logonly" and "coutonly", and it sets the outputs to std::cout and/or a logfile.

The method takes a logfile name as its input argument. It returns 0 if everything went ok. 1 otherwise.

Variable Documentation

NrOfSupportedImageTypes

const unsigned int elastix::NrOfSupportedImageTypes = 4

******************** SupportedImageTypes *********************

Add here the combinations of ImageTypes that elastix should support.

Syntax:

elxSupportedImageTypeMacro( FixedImagePixelType, FixedImageDimension, MovingImagePixelType, MovingImageDimension, Index )

Each combination of image types has as 'ID', the Index. Duplicate indices are not allowed. Index 0 is not allowed. The indices must form a "continuous series": ( index_{i} - index_{i-1} == 1 ).

The NrOfSupportedImageTypes must also be set to the right value.

elastix, and all its components, must be recompiled after adding a line in this file.

Definition at line 62 of file elxSupportedImageTypes.h.