itkParabolicMorphUtils.h

Go to the documentation of this file.

/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef __itkParabolicUtils_h
#define __itkParabolicUtils_h
 
#include <itkArray.h>
 
#include "itkProgressReporter.h"
namespace itk
{
template< class LineBufferType, class RealType, bool doDilate >
void
DoLine( LineBufferType & LineBuf, LineBufferType & tmpLineBuf,
  const RealType magnitude, const RealType m_Extreme )
{
  // contact point algorithm
  long koffset = 0, newcontact = 0;  // how far away the search starts.
 
  const long LineLength = LineBuf.size();
  // negative half of the parabola
  for( long pos = 0; pos < LineLength; pos++ )
  {
    RealType BaseVal = (RealType)m_Extreme; // the base value for
    // comparison
    for( long krange = koffset; krange <= 0; krange++ )
    {
      // difference needs to be paramaterised
      RealType T = LineBuf[ pos + krange ] - magnitude * krange * krange;
      // switch on template parameter - hopefully gets optimized away.
      if( doDilate ? ( T >= BaseVal ) : ( T <= BaseVal ) )
      {
        BaseVal    = T;
        newcontact = krange;
      }
    }
    tmpLineBuf[ pos ] = BaseVal;
    koffset           = newcontact - 1;
  }
  // positive half of parabola
  koffset = newcontact = 0;
  for( long pos = LineLength - 1; pos >= 0; pos-- )
  {
    RealType BaseVal = (RealType)m_Extreme; // the base value for comparison
    for( long krange = koffset; krange >= 0; krange-- )
    {
      RealType T = tmpLineBuf[ pos + krange ] - magnitude * krange * krange;
      if( doDilate ? ( T >= BaseVal ) : ( T <= BaseVal ) )
      {
        BaseVal    = T;
        newcontact = krange;
      }
    }
    LineBuf[ pos ] = BaseVal;
    koffset        = newcontact + 1;
  }
}
 
 
template< class TInIter, class TOutIter, class RealType,
class OutputPixelType, bool doDilate >
void
doOneDimension( TInIter & inputIterator, TOutIter & outputIterator,
  ProgressReporter & progress,
  const long LineLength,
  const unsigned direction,
  const int m_MagnitudeSign,
  const bool m_UseImageSpacing,
  const RealType m_Extreme,
  const RealType image_scale,
  const RealType Sigma )
{
//  typedef typename std::vector<RealType> LineBufferType;
 
  // message from M.Starring suggested performance gain using Array
  // instead of std::vector.
  typedef typename itk::Array< RealType > LineBufferType;
  RealType iscale = 1.0;
  if( m_UseImageSpacing )
  {
    iscale = image_scale;
  }
  const RealType magnitude = m_MagnitudeSign * 1.0 / ( 2.0 * Sigma / ( iscale * iscale ) );
  LineBufferType LineBuf( LineLength );
  LineBufferType tmpLineBuf( LineLength );
  inputIterator.SetDirection( direction );
  outputIterator.SetDirection( direction );
  inputIterator.GoToBegin();
  outputIterator.GoToBegin();
 
  while( !inputIterator.IsAtEnd() && !outputIterator.IsAtEnd() )
  {
    // process this direction
    // fetch the line into the buffer - this methodology is like
    // the gaussian filters
    unsigned int i = 0;
    while( !inputIterator.IsAtEndOfLine() )
    {
      LineBuf[ i++ ] = static_cast< RealType >( inputIterator.Get() );
      ++inputIterator;
    }
 
    DoLine< LineBufferType, RealType, doDilate >( LineBuf, tmpLineBuf, magnitude, m_Extreme );
    // copy the line back
    unsigned int j = 0;
    while( !outputIterator.IsAtEndOfLine() )
    {
      outputIterator.Set( static_cast< OutputPixelType >( LineBuf[ j++ ] ) );
      ++outputIterator;
    }
 
    // now onto the next line
    inputIterator.NextLine();
    outputIterator.NextLine();
    progress.CompletedPixel();
  }
}
 
 
}
#endif