itkAdvancedKappaStatisticImageToImageMetric.h

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 *  Copyright UMC Utrecht and contributors
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *        http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
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#ifndef __itkAdvancedKappaStatisticImageToImageMetric_h
#define __itkAdvancedKappaStatisticImageToImageMetric_h
 
#include "itkAdvancedImageToImageMetric.h"
 
namespace itk
{
 
template< class TFixedImage, class TMovingImage >
class AdvancedKappaStatisticImageToImageMetric :
  public AdvancedImageToImageMetric< TFixedImage, TMovingImage >
{
public:
 
  typedef AdvancedKappaStatisticImageToImageMetric Self;
  typedef AdvancedImageToImageMetric<
    TFixedImage, TMovingImage >                   Superclass;
  typedef SmartPointer< Self >       Pointer;
  typedef SmartPointer< const Self > ConstPointer;
 
  itkNewMacro( Self );
 
  itkTypeMacro( AdvancedKappaStatisticImageToImageMetric, AdvancedImageToImageMetric );
 
  typedef typename
    Superclass::CoordinateRepresentationType CoordinateRepresentationType;
  typedef typename Superclass::MovingImageType            MovingImageType;
  typedef typename Superclass::MovingImagePixelType       MovingImagePixelType;
  typedef typename Superclass::MovingImageConstPointer    MovingImageConstPointer;
  typedef typename Superclass::FixedImageType             FixedImageType;
  typedef typename Superclass::FixedImageConstPointer     FixedImageConstPointer;
  typedef typename Superclass::FixedImageRegionType       FixedImageRegionType;
  typedef typename Superclass::TransformType              TransformType;
  typedef typename Superclass::TransformPointer           TransformPointer;
  typedef typename Superclass::InputPointType             InputPointType;
  typedef typename Superclass::OutputPointType            OutputPointType;
  typedef typename Superclass::TransformParametersType    TransformParametersType;
  typedef typename Superclass::TransformJacobianType      TransformJacobianType;
  typedef typename Superclass::NumberOfParametersType     NumberOfParametersType;
  typedef typename Superclass::InterpolatorType           InterpolatorType;
  typedef typename Superclass::InterpolatorPointer        InterpolatorPointer;
  typedef typename Superclass::RealType                   RealType;
  typedef typename Superclass::GradientPixelType          GradientPixelType;
  typedef typename Superclass::GradientImageType          GradientImageType;
  typedef typename Superclass::GradientImagePointer       GradientImagePointer;
  typedef typename Superclass::GradientImageFilterType    GradientImageFilterType;
  typedef typename Superclass::GradientImageFilterPointer GradientImageFilterPointer;
  typedef typename Superclass::FixedImageMaskType         FixedImageMaskType;
  typedef typename Superclass::FixedImageMaskPointer      FixedImageMaskPointer;
  typedef typename Superclass::MovingImageMaskType        MovingImageMaskType;
  typedef typename Superclass::MovingImageMaskPointer     MovingImageMaskPointer;
  typedef typename Superclass::MeasureType                MeasureType;
  typedef typename Superclass::DerivativeType             DerivativeType;
  typedef typename Superclass::DerivativeValueType        DerivativeValueType;
  typedef typename Superclass::ParametersType             ParametersType;
  typedef typename Superclass::FixedImagePixelType        FixedImagePixelType;
  typedef typename Superclass::MovingImageRegionType      MovingImageRegionType;
  typedef typename Superclass::ImageSamplerType           ImageSamplerType;
  typedef typename Superclass::ImageSamplerPointer        ImageSamplerPointer;
  typedef typename Superclass::ImageSampleContainerType   ImageSampleContainerType;
  typedef typename
    Superclass::ImageSampleContainerPointer ImageSampleContainerPointer;
  typedef typename Superclass::FixedImageLimiterType  FixedImageLimiterType;
  typedef typename Superclass::MovingImageLimiterType MovingImageLimiterType;
  typedef typename
    Superclass::FixedImageLimiterOutputType FixedImageLimiterOutputType;
  typedef typename
    Superclass::MovingImageLimiterOutputType MovingImageLimiterOutputType;
  typedef typename
    Superclass::MovingImageDerivativeScalesType MovingImageDerivativeScalesType;
  typedef typename Superclass::ThreaderType   ThreaderType;
  typedef typename Superclass::ThreadInfoType ThreadInfoType;
 
  itkStaticConstMacro( FixedImageDimension, unsigned int,
    FixedImageType::ImageDimension );
 
  itkStaticConstMacro( MovingImageDimension, unsigned int,
    MovingImageType::ImageDimension );
 
  MeasureType GetValue( const TransformParametersType & parameters ) const override;
 
  void GetDerivative( const TransformParametersType & parameters,
    DerivativeType & derivative ) const override;
 
  virtual void GetValueAndDerivativeSingleThreaded(
    const TransformParametersType & parameters,
    MeasureType & Value, DerivativeType & Derivative ) const;
 
  void GetValueAndDerivative(
    const TransformParametersType & parameters,
    MeasureType & Value, DerivativeType & Derivative ) const override;
 
  void ComputeGradient( void ) override;
 
  itkSetMacro( ForegroundValue, RealType );
  itkGetConstReferenceMacro( ForegroundValue, RealType );
 
  itkSetMacro( UseForegroundValue, bool );
 
  itkSetMacro( Complement, bool );
  itkGetConstReferenceMacro( Complement, bool );
  itkBooleanMacro( Complement );
 
  itkSetMacro( Epsilon, RealType );
  itkGetConstReferenceMacro( Epsilon, RealType );
 
protected:
 
  AdvancedKappaStatisticImageToImageMetric();
  ~AdvancedKappaStatisticImageToImageMetric() override;
 
  void PrintSelf( std::ostream & os, Indent indent ) const override;
 
  typedef typename Superclass::FixedImageIndexType                 FixedImageIndexType;
  typedef typename Superclass::FixedImageIndexValueType            FixedImageIndexValueType;
  typedef typename Superclass::MovingImageIndexType                MovingImageIndexType;
  typedef typename Superclass::FixedImagePointType                 FixedImagePointType;
  typedef typename Superclass::MovingImagePointType                MovingImagePointType;
  typedef typename Superclass::MovingImageContinuousIndexType      MovingImageContinuousIndexType;
  typedef typename Superclass::BSplineInterpolatorType             BSplineInterpolatorType;
  typedef typename Superclass::CentralDifferenceGradientFilterType CentralDifferenceGradientFilterType;
  typedef typename Superclass::MovingImageDerivativeType           MovingImageDerivativeType;
  typedef typename Superclass::NonZeroJacobianIndicesType          NonZeroJacobianIndicesType;
 
  void UpdateValueAndDerivativeTerms(
    const RealType & fixedImageValue,
    const RealType & movingImageValue,
    std::size_t & fixedForegroundArea,
    std::size_t & movingForegroundArea,
    std::size_t & intersection,
    const DerivativeType & imageJacobian,
    const NonZeroJacobianIndicesType & nzji,
    DerivativeType & sum1,
    DerivativeType & sum2 ) const;
 
  void InitializeThreadingParameters( void ) const override;
 
  inline void ThreadedGetValueAndDerivative( ThreadIdType threadID ) override;
 
  inline void AfterThreadedGetValueAndDerivative(
    MeasureType & value, DerivativeType & derivative ) const override;
 
  static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION AccumulateDerivativesThreaderCallback( void * arg );
 
private:
 
  AdvancedKappaStatisticImageToImageMetric( const Self & ); // purposely not implemented
  void operator=( const Self & );                           // purposely not implemented
 
  bool     m_UseForegroundValue;
  RealType m_ForegroundValue;
  RealType m_Epsilon;
  bool     m_Complement;
 
  struct MultiThreaderAccumulateDerivativeType
  {
    AdvancedKappaStatisticImageToImageMetric * st_Metric;
 
    MeasureType           st_Coefficient1;
    MeasureType           st_Coefficient2;
    DerivativeValueType * st_DerivativePointer;
  };
 
  struct KappaGetValueAndDerivativePerThreadStruct
  {
    SizeValueType  st_NumberOfPixelsCounted;
    SizeValueType  st_AreaSum;
    SizeValueType  st_AreaIntersection;
    DerivativeType st_DerivativeSum1;
    DerivativeType st_DerivativeSum2;
  };
  itkPadStruct( ITK_CACHE_LINE_ALIGNMENT, KappaGetValueAndDerivativePerThreadStruct,
    PaddedKappaGetValueAndDerivativePerThreadStruct );
  itkAlignedTypedef( ITK_CACHE_LINE_ALIGNMENT, PaddedKappaGetValueAndDerivativePerThreadStruct,
    AlignedKappaGetValueAndDerivativePerThreadStruct );
  mutable AlignedKappaGetValueAndDerivativePerThreadStruct * m_KappaGetValueAndDerivativePerThreadVariables;
  mutable ThreadIdType                                       m_KappaGetValueAndDerivativePerThreadVariablesSize;
 
};
 
} // end namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#include "itkAdvancedKappaStatisticImageToImageMetric.hxx"
#endif
 
#endif // end #ifndef __itkAdvancedKappaStatisticImageToImageMetric_h