itk::TransformixInputPointFileReader< TOutputMesh > Class Template Reference

#include <itkTransformixInputPointFileReader.h>

Detailed Description

template<class TOutputMesh>
class itk::TransformixInputPointFileReader< TOutputMesh >

A reader that understands transformix input point files.

A reader that understands transformix input point files.

The first word in the text file indicates whether the input points are given as an integer image index or as a point (world coordinates). If the file does not start with "index" or "point" it is assumed that the points are entered as indices, for compatibility with elastix versions < 3.503.

The second word in the text file represents the number of points that should be read.

Definition at line 46 of file itkTransformixInputPointFileReader.h.

Inheritance diagram for itk::TransformixInputPointFileReader< TOutputMesh >:

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DataObjectPointer	DatabObjectPointer
typedef Superclass::OutputMeshPointer	OutputMeshPointer
typedef Superclass::OutputMeshType	OutputMeshType
typedef SmartPointer< Self >	Pointer
typedef TransformixInputPointFileReader	Self
typedef MeshFileReaderBase< TOutputMesh >	Superclass
Public Types inherited from itk::MeshFileReaderBase< TOutputMesh >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DataObjectPointer	DatabObjectPointer
typedef Superclass::OutputMeshPointer	OutputMeshPointer
typedef Superclass::OutputMeshType	OutputMeshType
typedef SmartPointer< Self >	Pointer
typedef MeshFileReaderBase	Self
typedef MeshSource< TOutputMesh >	Superclass

Public Member Functions
void	GenerateOutputInformation (void) override
virtual const char *	GetClassName () const
virtual unsigned long	GetNumberOfPoints () const
virtual bool	GetPointsAreIndices () const
Public Member Functions inherited from itk::MeshFileReaderBase< TOutputMesh >
void	EnlargeOutputRequestedRegion (DataObject *output) override
void	GenerateOutputInformation (void) override
virtual const char *	GetClassName () const
virtual const char *	GetFileName () const
virtual void	SetFileName (const char *_arg)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::MeshFileReaderBase< TOutputMesh >
static Pointer	New ()

Protected Member Functions
void	GenerateData (void) override
	TransformixInputPointFileReader ()
	~TransformixInputPointFileReader () override
Protected Member Functions inherited from itk::MeshFileReaderBase< TOutputMesh >
	MeshFileReaderBase ()
virtual void	TestFileExistanceAndReadability (void)
	~MeshFileReaderBase () override

Protected Attributes
unsigned long	m_NumberOfPoints
bool	m_PointsAreIndices
std::ifstream	m_Reader
Protected Attributes inherited from itk::MeshFileReaderBase< TOutputMesh >
std::string	m_FileName

Private Member Functions
void	operator= (const Self &)
	TransformixInputPointFileReader (const Self &)

Member Typedef Documentation

ConstPointer

template<class TOutputMesh >

typedef SmartPointer< const Self > itk::TransformixInputPointFileReader< TOutputMesh >::ConstPointer

Definition at line 54 of file itkTransformixInputPointFileReader.h.

DatabObjectPointer

template<class TOutputMesh >

typedef Superclass::DataObjectPointer itk::TransformixInputPointFileReader< TOutputMesh >::DatabObjectPointer

Some convenient typedefs.

Definition at line 63 of file itkTransformixInputPointFileReader.h.

OutputMeshPointer

template<class TOutputMesh >

typedef Superclass::OutputMeshPointer itk::TransformixInputPointFileReader< TOutputMesh >::OutputMeshPointer

Definition at line 65 of file itkTransformixInputPointFileReader.h.

OutputMeshType

template<class TOutputMesh >

typedef Superclass::OutputMeshType itk::TransformixInputPointFileReader< TOutputMesh >::OutputMeshType

Definition at line 64 of file itkTransformixInputPointFileReader.h.

Pointer

template<class TOutputMesh >

typedef SmartPointer< Self > itk::TransformixInputPointFileReader< TOutputMesh >::Pointer

Definition at line 53 of file itkTransformixInputPointFileReader.h.

Self

template<class TOutputMesh >

typedef TransformixInputPointFileReader itk::TransformixInputPointFileReader< TOutputMesh >::Self

Standard class typedefs.

Definition at line 51 of file itkTransformixInputPointFileReader.h.

Superclass

template<class TOutputMesh >

typedef MeshFileReaderBase< TOutputMesh > itk::TransformixInputPointFileReader< TOutputMesh >::Superclass

Definition at line 52 of file itkTransformixInputPointFileReader.h.

Constructor & Destructor Documentation

TransformixInputPointFileReader() [1/2]

template<class TOutputMesh >

itk::TransformixInputPointFileReader< TOutputMesh >::TransformixInputPointFileReader ( )

protected

~TransformixInputPointFileReader()

template<class TOutputMesh >

itk::TransformixInputPointFileReader< TOutputMesh >::~TransformixInputPointFileReader ( )

overrideprotected

TransformixInputPointFileReader() [2/2]

template<class TOutputMesh >

itk::TransformixInputPointFileReader< TOutputMesh >::TransformixInputPointFileReader ( const Self &  )

private

Member Function Documentation

GenerateData()

template<class TOutputMesh >

void itk::TransformixInputPointFileReader< TOutputMesh >::GenerateData ( void  )

overrideprotected

Fill the point container of the output.

GenerateOutputInformation()

template<class TOutputMesh >

void itk::TransformixInputPointFileReader< TOutputMesh >::GenerateOutputInformation ( void  )

override

Prepare the allocation of the output mesh during the first back propagation of the pipeline. Updates the PointsAreIndices and NumberOfPoints.

GetClassName()

template<class TOutputMesh >

virtual const char * itk::TransformixInputPointFileReader< TOutputMesh >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::MeshFileReaderBase< TOutputMesh >.

GetNumberOfPoints()

template<class TOutputMesh >

virtual unsigned long itk::TransformixInputPointFileReader< TOutputMesh >::GetNumberOfPoints ( ) const

virtual

Get the number of points that are defined in the file. In fact we also should store this somehow in the output dataobject, but that would mean resizing the point container, while still filled with invalid data (since the GetNumberOfPoints method in a PointSet returns the size of the point container. Storing as metadata would be another option. For now leave it like this. This is a little similar to the ImageIO classes. They also contain information about the image that they will read. For the Mesh readers I didn't choose for a MeshIO-design, but for a MeshReaderBase class and inheriting classes, so somehow it seems logic to store this kind of data in the inheriting reader classes.

GetPointsAreIndices()

template<class TOutputMesh >

virtual bool itk::TransformixInputPointFileReader< TOutputMesh >::GetPointsAreIndices ( ) const

virtual

Get whether the read points are indices; actually we should store this as a kind of meta data in the output, but i don't understand this concept yet...

New()

template<class TOutputMesh >

static Pointer itk::TransformixInputPointFileReader< TOutputMesh >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TOutputMesh >

void itk::TransformixInputPointFileReader< TOutputMesh >::operator= ( const Self &  )

private

Field Documentation

m_NumberOfPoints

template<class TOutputMesh >

unsigned long itk::TransformixInputPointFileReader< TOutputMesh >::m_NumberOfPoints

protected

Definition at line 98 of file itkTransformixInputPointFileReader.h.

m_PointsAreIndices

template<class TOutputMesh >

bool itk::TransformixInputPointFileReader< TOutputMesh >::m_PointsAreIndices

protected

Definition at line 99 of file itkTransformixInputPointFileReader.h.

m_Reader

template<class TOutputMesh >

std::ifstream itk::TransformixInputPointFileReader< TOutputMesh >::m_Reader

protected

Definition at line 101 of file itkTransformixInputPointFileReader.h.