itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet > Class Template Reference

#include <itkStatisticalShapePointPenalty.h>

Detailed Description

template<class TFixedPointSet, class TMovingPointSet>
class itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >

Computes the Mahalanobis distance between the transformed shape and a mean shape. A model mean and covariance are required.

Author

F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands

Note

This work was funded by the projects Care4Me and Mediate.

If you use the StatisticalShapePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013), http://dx.doi.org/10.1016/j.cviu.2012.12.006

Definition at line 56 of file itkStatisticalShapePointPenalty.h.

Inheritance diagram for itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >:

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef OutputPointType::CoordRepType	CoordRepType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::DerivativeValueType	DerivativeValueType
typedef Superclass::FixedPointSetConstPointer	FixedPointSetConstPointer
typedef Superclass::FixedPointSetType	FixedPointSetType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingPointSetConstPointer	MovingPointSetConstPointer
typedef Superclass::MovingPointSetType	MovingPointSetType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef Superclass::OutputPointType	OutputPointType
typedef vnl_svd_economy< CoordRepType >	PCACovarianceType
typedef Superclass::PointDataIterator	PointDataIterator
typedef SmartPointer< Self >	Pointer
typedef Superclass::PointIterator	PointIterator
typedef std::vector< VnlVectorType * >	ProposalDerivativeType
typedef StatisticalShapePointPenalty	Self
typedef SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
typedef vnl_matrix< CoordRepType >	VnlMatrixType
typedef vnl_vector< CoordRepType >	VnlVectorType
Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::ParametersValueType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer
typedef FixedImageMaskType::Pointer	FixedImageMaskPointer
typedef SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) >	FixedImageMaskType
typedef FixedPointSetType::ConstPointer	FixedPointSetConstPointer
typedef FixedPointSetType::PixelType	FixedPointSetPixelType
typedef TFixedPointSet	FixedPointSetType
typedef TransformType::InputPointType	InputPointType
typedef Superclass::MeasureType	MeasureType
typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer
typedef MovingImageMaskType::Pointer	MovingImageMaskPointer
typedef SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) >	MovingImageMaskType
typedef MovingPointSetType::ConstPointer	MovingPointSetConstPointer
typedef MovingPointSetType::PixelType	MovingPointSetPixelType
typedef TMovingPointSet	MovingPointSetType
typedef TransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef TransformType::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef FixedPointSetType::PointDataContainer::ConstIterator	PointDataIterator
typedef SmartPointer< Self >	Pointer
typedef FixedPointSetType::PointsContainer::ConstIterator	PointIterator
typedef SingleValuedPointSetToPointSetMetric	Self
typedef SingleValuedCostFunction	Superclass
typedef TransformType::JacobianType	TransformJacobianType
typedef TransformType::ParametersType	TransformParametersType
typedef TransformType::Pointer	TransformPointer
typedef AdvancedTransform< CoordinateRepresentationType, itkGetStaticConstMacro(FixedPointSetDimension), itkGetStaticConstMacro(MovingPointSetDimension) >	TransformType

Public Member Functions
virtual void	BaseVarianceNeedsUpdateOff ()
virtual void	BaseVarianceNeedsUpdateOn ()
virtual MeasureType	GetBaseVariance ()
virtual MeasureType	GetCentroidXVariance ()
virtual MeasureType	GetCentroidYVariance ()
virtual MeasureType	GetCentroidZVariance ()
virtual const char *	GetClassName () const
virtual MeasureType	GetCutOffSharpness ()
virtual MeasureType	GetCutOffValue ()
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const override
virtual const bool &	GetNormalizedShapeModel ()
virtual const int &	GetShapeModelCalculation ()
virtual MeasureType	GetShrinkageIntensity ()
virtual MeasureType	GetSizeVariance ()
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void	Initialize (void) override
virtual void	NormalizedShapeModelOff ()
virtual void	NormalizedShapeModelOn ()
virtual void	SetBaseVariance (MeasureType _arg)
virtual void	SetBaseVarianceNeedsUpdate (bool _arg)
virtual void	SetCentroidXVariance (MeasureType _arg)
virtual void	SetCentroidYVariance (MeasureType _arg)
virtual void	SetCentroidZVariance (MeasureType _arg)
virtual void	SetCovarianceMatrix (const vnl_matrix< double > *_arg)
virtual void	SetCutOffSharpness (MeasureType _arg)
virtual void	SetCutOffValue (MeasureType _arg)
virtual void	SetEigenValues (const vnl_vector< double > *_arg)
virtual void	SetEigenVectors (const vnl_matrix< double > *_arg)
virtual void	SetMeanVector (const vnl_vector< double > *_arg)
virtual void	SetNormalizedShapeModel (bool _arg)
virtual void	SetShapeModelCalculation (int _arg)
virtual void	SetShrinkageIntensity (MeasureType _arg)
virtual void	SetShrinkageIntensityNeedsUpdate (bool _arg)
virtual void	SetSizeVariance (MeasureType _arg)
virtual void	SetVariancesNeedsUpdate (bool _arg)
virtual void	ShrinkageIntensityNeedsUpdateOff ()
virtual void	ShrinkageIntensityNeedsUpdateOn ()
virtual void	VariancesNeedsUpdateOff ()
virtual void	VariancesNeedsUpdateOn ()
Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const char *	GetClassName () const
virtual const FixedImageMaskType *	GetFixedImageMask ()
virtual const FixedPointSetType *	GetFixedPointSet ()
virtual const MovingImageMaskType *	GetMovingImageMask ()
virtual const MovingPointSetType *	GetMovingPointSet ()
unsigned int	GetNumberOfParameters (void) const override
virtual const TransformType *	GetTransform ()
virtual const bool &	GetUseMetricSingleThreaded ()
virtual void	Initialize (void)
	itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)
	itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void	SetFixedPointSet (const FixedPointSetType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void	SetMovingPointSet (const MovingPointSetType *_arg)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const override
	StatisticalShapePointPenalty ()
	~StatisticalShapePointPenalty () override
Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
void	PrintSelf (std::ostream &os, Indent indent) const override
	SingleValuedPointSetToPointSetMetric ()
	~SingleValuedPointSetToPointSetMetric () override

Private Member Functions
void	CalculateCutOffDerivative (typename DerivativeType::element_type &derivativeElement, const MeasureType &value) const
void	CalculateCutOffValue (MeasureType &value) const
void	CalculateDerivative (DerivativeType &derivative, const MeasureType &value, const VnlVectorType &differenceVector, const VnlVectorType &centerrotated, const VnlVectorType &eigrot, const unsigned int shapeLength) const
void	CalculateValue (MeasureType &value, VnlVectorType &differenceVector, VnlVectorType &centerrotated, VnlVectorType &eigrot) const
void	FillProposalDerivative (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
void	FillProposalVector (const OutputPointType &fixedPoint, const unsigned int vertexindex) const
void	NormalizeProposalVector (const unsigned int shapeLength) const
void	operator= (const Self &)
	StatisticalShapePointPenalty (const Self &)
void	UpdateCentroidAndAlignProposalDerivative (const unsigned int shapeLength) const
void	UpdateCentroidAndAlignProposalVector (const unsigned int shapeLength) const
void	UpdateL2 (const unsigned int shapeLength) const
void	UpdateL2AndNormalizeProposalDerivative (const unsigned int shapeLength) const

Private Attributes
double	m_BaseStd
double	m_BaseVariance
bool	m_BaseVarianceNeedsUpdate
double	m_CentroidXStd
double	m_CentroidXVariance
double	m_CentroidYStd
double	m_CentroidYVariance
double	m_CentroidZStd
double	m_CentroidZVariance
const VnlMatrixType *	m_CovarianceMatrix
double	m_CutOffSharpness
double	m_CutOffValue
const VnlVectorType *	m_EigenValues
VnlVectorType *	m_EigenValuesRegularized
const VnlMatrixType *	m_EigenVectors
VnlMatrixType *	m_InverseCovarianceMatrix
VnlVectorType	m_MeanValues
const VnlVectorType *	m_MeanVector
bool	m_NormalizedShapeModel
ProposalDerivativeType *	m_ProposalDerivative
unsigned int	m_ProposalLength
VnlVectorType	m_ProposalVector
int	m_ShapeModelCalculation
double	m_ShrinkageIntensity
bool	m_ShrinkageIntensityNeedsUpdate
double	m_SizeStd
double	m_SizeVariance
bool	m_VariancesNeedsUpdate

Additional Inherited Members
Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >
FixedImageMaskConstPointer	m_FixedImageMask
FixedPointSetConstPointer	m_FixedPointSet
MovingImageMaskConstPointer	m_MovingImageMask
MovingPointSetConstPointer	m_MovingPointSet
unsigned int	m_NumberOfPointsCounted
TransformPointer	m_Transform
bool	m_UseMetricSingleThreaded

Member Typedef Documentation

ConstPointer

template<class TFixedPointSet , class TMovingPointSet >

typedef SmartPointer< const Self > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ConstPointer

Definition at line 66 of file itkStatisticalShapePointPenalty.h.

CoordRepType

template<class TFixedPointSet , class TMovingPointSet >

typedef OutputPointType::CoordRepType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CoordRepType

Definition at line 96 of file itkStatisticalShapePointPenalty.h.

DerivativeType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::DerivativeType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::DerivativeType

Definition at line 83 of file itkStatisticalShapePointPenalty.h.

DerivativeValueType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::DerivativeValueType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::DerivativeValueType

Definition at line 84 of file itkStatisticalShapePointPenalty.h.

FixedPointSetConstPointer

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::FixedPointSetConstPointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FixedPointSetConstPointer

Definition at line 87 of file itkStatisticalShapePointPenalty.h.

FixedPointSetType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::FixedPointSetType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FixedPointSetType

Definition at line 85 of file itkStatisticalShapePointPenalty.h.

InputPointType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::InputPointType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::InputPointType

Definition at line 93 of file itkStatisticalShapePointPenalty.h.

MeasureType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::MeasureType

Definition at line 82 of file itkStatisticalShapePointPenalty.h.

MovingPointSetConstPointer

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::MovingPointSetConstPointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::MovingPointSetConstPointer

Definition at line 88 of file itkStatisticalShapePointPenalty.h.

MovingPointSetType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::MovingPointSetType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::MovingPointSetType

Definition at line 86 of file itkStatisticalShapePointPenalty.h.

NonZeroJacobianIndicesType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::NonZeroJacobianIndicesType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NonZeroJacobianIndicesType

Definition at line 80 of file itkStatisticalShapePointPenalty.h.

OutputPointType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::OutputPointType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::OutputPointType

Definition at line 94 of file itkStatisticalShapePointPenalty.h.

PCACovarianceType

template<class TFixedPointSet , class TMovingPointSet >

typedef vnl_svd_economy< CoordRepType > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PCACovarianceType

Definition at line 102 of file itkStatisticalShapePointPenalty.h.

PointDataIterator

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::PointDataIterator itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PointDataIterator

Definition at line 91 of file itkStatisticalShapePointPenalty.h.

Pointer

template<class TFixedPointSet , class TMovingPointSet >

typedef SmartPointer< Self > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Pointer

Definition at line 65 of file itkStatisticalShapePointPenalty.h.

PointIterator

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::PointIterator itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PointIterator

Definition at line 90 of file itkStatisticalShapePointPenalty.h.

ProposalDerivativeType

template<class TFixedPointSet , class TMovingPointSet >

typedef std::vector< VnlVectorType * > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ProposalDerivativeType

Definition at line 100 of file itkStatisticalShapePointPenalty.h.

Self

template<class TFixedPointSet , class TMovingPointSet >

typedef StatisticalShapePointPenalty itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Self

Standard class typedefs.

Definition at line 62 of file itkStatisticalShapePointPenalty.h.

Superclass

template<class TFixedPointSet , class TMovingPointSet >

typedef SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Superclass

Definition at line 64 of file itkStatisticalShapePointPenalty.h.

TransformJacobianType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::TransformJacobianType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformJacobianType

Definition at line 79 of file itkStatisticalShapePointPenalty.h.

TransformParametersType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::TransformParametersType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformParametersType

Definition at line 78 of file itkStatisticalShapePointPenalty.h.

TransformPointer

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::TransformPointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformPointer

Definition at line 77 of file itkStatisticalShapePointPenalty.h.

TransformType

template<class TFixedPointSet , class TMovingPointSet >

typedef Superclass::TransformType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::TransformType

Types transferred from the base class

Definition at line 76 of file itkStatisticalShapePointPenalty.h.

VnlMatrixType

template<class TFixedPointSet , class TMovingPointSet >

typedef vnl_matrix< CoordRepType > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlMatrixType

Definition at line 98 of file itkStatisticalShapePointPenalty.h.

VnlVectorType

template<class TFixedPointSet , class TMovingPointSet >

typedef vnl_vector< CoordRepType > itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VnlVectorType

Definition at line 97 of file itkStatisticalShapePointPenalty.h.

Constructor & Destructor Documentation

StatisticalShapePointPenalty() [1/2]

template<class TFixedPointSet , class TMovingPointSet >

itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::StatisticalShapePointPenalty ( )

protected

~StatisticalShapePointPenalty()

template<class TFixedPointSet , class TMovingPointSet >

itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::~StatisticalShapePointPenalty ( )

overrideprotected

StatisticalShapePointPenalty() [2/2]

template<class TFixedPointSet , class TMovingPointSet >

itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::StatisticalShapePointPenalty ( const Self &  )

private

Member Function Documentation

BaseVarianceNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOff ( )

virtual

BaseVarianceNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::BaseVarianceNeedsUpdateOn ( )

virtual

CalculateCutOffDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffDerivative ( typename DerivativeType::element_type &  derivativeElement, const MeasureType &  value  ) const

private

CalculateCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateCutOffValue ( MeasureType &  value ) const

private

CalculateDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateDerivative ( DerivativeType &  derivative, const MeasureType &  value, const VnlVectorType &  differenceVector, const VnlVectorType &  centerrotated, const VnlVectorType &  eigrot, const unsigned int  shapeLength  ) const

private

CalculateValue()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::CalculateValue ( MeasureType &  value, VnlVectorType &  differenceVector, VnlVectorType &  centerrotated, VnlVectorType &  eigrot  ) const

private

FillProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalDerivative ( const OutputPointType &  fixedPoint, const unsigned int  vertexindex  ) const

private

FillProposalVector()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::FillProposalVector ( const OutputPointType &  fixedPoint, const unsigned int  vertexindex  ) const

private

GetBaseVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetBaseVariance ( )

virtual

GetCentroidXVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidXVariance ( )

virtual

GetCentroidYVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidYVariance ( )

virtual

GetCentroidZVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCentroidZVariance ( )

virtual

GetClassName()

template<class TFixedPointSet , class TMovingPointSet >

virtual const char * itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

Reimplemented in elastix::StatisticalShapePenalty< TElastix >.

GetCutOffSharpness()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffSharpness ( )

virtual

GetCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetCutOffValue ( )

virtual

GetDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetDerivative ( const TransformParametersType &  parameters, DerivativeType &  Derivative  ) const

override

Get the derivatives of the match measure.

GetNormalizedShapeModel()

template<class TFixedPointSet , class TMovingPointSet >

virtual const bool & itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetNormalizedShapeModel ( )

virtual

GetShapeModelCalculation()

template<class TFixedPointSet , class TMovingPointSet >

virtual const int & itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShapeModelCalculation ( )

virtual

GetShrinkageIntensity()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetShrinkageIntensity ( )

virtual

GetSizeVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetSizeVariance ( )

virtual

GetValue()

template<class TFixedPointSet , class TMovingPointSet >

MeasureType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValue ( const TransformParametersType &  parameters ) const

override

Get the value for single valued optimizers.

GetValueAndDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::GetValueAndDerivative ( const TransformParametersType &  parameters, MeasureType &  Value, DerivativeType &  Derivative  ) const

override

Get value and derivatives for multiple valued optimizers.

Initialize()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::Initialize ( void  )

overridevirtual

Initialization.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >.

New()

template<class TFixedPointSet , class TMovingPointSet >

static Pointer itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::New ( )

static

Method for creation through the object factory.

NormalizedShapeModelOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOff ( )

virtual

NormalizedShapeModelOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizedShapeModelOn ( )

virtual

NormalizeProposalVector()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::NormalizeProposalVector ( const unsigned int  shapeLength ) const

private

operator=()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::operator= ( const Self &  )

private

PrintSelf()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotected

PrintSelf.

SetBaseVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVariance ( MeasureType  _arg )

virtual

Set/Get the BaseVariance parameter.

SetBaseVarianceNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetBaseVarianceNeedsUpdate ( bool  _arg )

virtual

SetCentroidXVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidXVariance ( MeasureType  _arg )

virtual

SetCentroidYVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidYVariance ( MeasureType  _arg )

virtual

SetCentroidZVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCentroidZVariance ( MeasureType  _arg )

virtual

SetCovarianceMatrix()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCovarianceMatrix ( const vnl_matrix< double > *  _arg )

virtual

SetCutOffSharpness()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffSharpness ( MeasureType  _arg )

virtual

SetCutOffValue()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetCutOffValue ( MeasureType  _arg )

virtual

SetEigenValues()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenValues ( const vnl_vector< double > *  _arg )

virtual

SetEigenVectors()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetEigenVectors ( const vnl_matrix< double > *  _arg )

virtual

SetMeanVector()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetMeanVector ( const vnl_vector< double > *  _arg )

virtual

SetNormalizedShapeModel()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetNormalizedShapeModel ( bool  _arg )

virtual

SetShapeModelCalculation()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShapeModelCalculation ( int  _arg )

virtual

SetShrinkageIntensity()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensity ( MeasureType  _arg )

virtual

Set/Get the shrinkageIntensity parameter.

SetShrinkageIntensityNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetShrinkageIntensityNeedsUpdate ( bool  _arg )

virtual

SetSizeVariance()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetSizeVariance ( MeasureType  _arg )

virtual

SetVariancesNeedsUpdate()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::SetVariancesNeedsUpdate ( bool  _arg )

virtual

ShrinkageIntensityNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOff ( )

virtual

ShrinkageIntensityNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::ShrinkageIntensityNeedsUpdateOn ( )

virtual

UpdateCentroidAndAlignProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalDerivative ( const unsigned int  shapeLength ) const

private

UpdateCentroidAndAlignProposalVector()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateCentroidAndAlignProposalVector ( const unsigned int  shapeLength ) const

private

UpdateL2()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2 ( const unsigned int  shapeLength ) const

private

UpdateL2AndNormalizeProposalDerivative()

template<class TFixedPointSet , class TMovingPointSet >

void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::UpdateL2AndNormalizeProposalDerivative ( const unsigned int  shapeLength ) const

private

VariancesNeedsUpdateOff()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOff ( )

virtual

VariancesNeedsUpdateOn()

template<class TFixedPointSet , class TMovingPointSet >

virtual void itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::VariancesNeedsUpdateOn ( )

virtual

Field Documentation

m_BaseStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseStd

private

Definition at line 245 of file itkStatisticalShapePointPenalty.h.

m_BaseVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVariance

private

Definition at line 244 of file itkStatisticalShapePointPenalty.h.

m_BaseVarianceNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_BaseVarianceNeedsUpdate

private

Definition at line 234 of file itkStatisticalShapePointPenalty.h.

m_CentroidXStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXStd

private

Definition at line 225 of file itkStatisticalShapePointPenalty.h.

m_CentroidXVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidXVariance

private

Definition at line 224 of file itkStatisticalShapePointPenalty.h.

m_CentroidYStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYStd

private

Definition at line 227 of file itkStatisticalShapePointPenalty.h.

m_CentroidYVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidYVariance

private

Definition at line 226 of file itkStatisticalShapePointPenalty.h.

m_CentroidZStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZStd

private

Definition at line 229 of file itkStatisticalShapePointPenalty.h.

m_CentroidZVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CentroidZVariance

private

Definition at line 228 of file itkStatisticalShapePointPenalty.h.

m_CovarianceMatrix

template<class TFixedPointSet , class TMovingPointSet >

const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CovarianceMatrix

private

Definition at line 218 of file itkStatisticalShapePointPenalty.h.

m_CutOffSharpness

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffSharpness

private

Definition at line 250 of file itkStatisticalShapePointPenalty.h.

m_CutOffValue

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_CutOffValue

private

Definition at line 249 of file itkStatisticalShapePointPenalty.h.

m_EigenValues

template<class TFixedPointSet , class TMovingPointSet >

const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValues

private

Definition at line 220 of file itkStatisticalShapePointPenalty.h.

m_EigenValuesRegularized

template<class TFixedPointSet , class TMovingPointSet >

VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenValuesRegularized

private

Definition at line 237 of file itkStatisticalShapePointPenalty.h.

m_EigenVectors

template<class TFixedPointSet , class TMovingPointSet >

const VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_EigenVectors

private

Definition at line 219 of file itkStatisticalShapePointPenalty.h.

m_InverseCovarianceMatrix

template<class TFixedPointSet , class TMovingPointSet >

VnlMatrixType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_InverseCovarianceMatrix

private

Definition at line 222 of file itkStatisticalShapePointPenalty.h.

m_MeanValues

template<class TFixedPointSet , class TMovingPointSet >

VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanValues

mutableprivate

Definition at line 247 of file itkStatisticalShapePointPenalty.h.

m_MeanVector

template<class TFixedPointSet , class TMovingPointSet >

const VnlVectorType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_MeanVector

private

Definition at line 217 of file itkStatisticalShapePointPenalty.h.

m_NormalizedShapeModel

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_NormalizedShapeModel

private

Definition at line 241 of file itkStatisticalShapePointPenalty.h.

m_ProposalDerivative

template<class TFixedPointSet , class TMovingPointSet >

ProposalDerivativeType* itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalDerivative

mutableprivate

Definition at line 239 of file itkStatisticalShapePointPenalty.h.

m_ProposalLength

template<class TFixedPointSet , class TMovingPointSet >

unsigned int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalLength

private

Definition at line 240 of file itkStatisticalShapePointPenalty.h.

m_ProposalVector

template<class TFixedPointSet , class TMovingPointSet >

VnlVectorType itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ProposalVector

mutableprivate

Definition at line 246 of file itkStatisticalShapePointPenalty.h.

m_ShapeModelCalculation

template<class TFixedPointSet , class TMovingPointSet >

int itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShapeModelCalculation

private

Definition at line 242 of file itkStatisticalShapePointPenalty.h.

m_ShrinkageIntensity

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensity

private

Definition at line 243 of file itkStatisticalShapePointPenalty.h.

m_ShrinkageIntensityNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_ShrinkageIntensityNeedsUpdate

private

Definition at line 233 of file itkStatisticalShapePointPenalty.h.

m_SizeStd

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeStd

private

Definition at line 231 of file itkStatisticalShapePointPenalty.h.

m_SizeVariance

template<class TFixedPointSet , class TMovingPointSet >

double itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_SizeVariance

private

Definition at line 230 of file itkStatisticalShapePointPenalty.h.

m_VariancesNeedsUpdate

template<class TFixedPointSet , class TMovingPointSet >

bool itk::StatisticalShapePointPenalty< TFixedPointSet, TMovingPointSet >::m_VariancesNeedsUpdate

private

Definition at line 235 of file itkStatisticalShapePointPenalty.h.