#include <itkParzenWindowMutualInformationImageToImageMetric.h>

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Computes the mutual information between two images to be registered using the method of Mattes et al.

ParzenWindowMutualInformationImageToImageMetric computes the mutual information between a fixed and moving image to be registered.

The calculations are based on the method of Mattes et al. [1,2], where the probability density distribution are estimated using Parzen histograms. Once the PDFs have been constructed, the mutual information is obtained by double summing over the discrete PDF values.

Construction of the PDFs is implemented in the superclass ParzenWindowHistogramImageToImageMetric.

This implementation of the MattesMutualInformation is based on the AdvancedImageToImageMetric, which means that:

It uses the ImageSampler-framework
It makes use of the compact support of B-splines, in case of B-spline transforms.
Image derivatives are computed using either the B-spline interpolator implementation or by nearest neighbor interpolation of a precomputed central difference image.
A minimum number of samples that should map within the moving image (mask) can be specified.

Notes:

This class returns the negative mutual information value.
This class in not thread safe due the private data structures used to the store the marginal and joint pdfs.

References:
[1] "Nonrigid multimodality image registration"
D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank
Medical Imaging 2001: Image Processing, 2001, pp. 1609-1620.
[2] "PET-CT Image Registration in the Chest Using Free-form Deformations"
D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank
IEEE Transactions in Medical Imaging. To Appear.
[3] "Optimization of Mutual Information for MultiResolution Image Registration"
P. Thevenaz and M. Unser
IEEE Transactions in Image Processing, 9(12) December 2000.

See also: ParzenWindowHistogramImageToImageMetric

Definition at line 75 of file itkParzenWindowMutualInformationImageToImageMetric.h.

Inheritance diagram for itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:

Data Structures
struct	ParzenWindowMutualInformationMultiThreaderParameterType

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType

typedef Superclass::FixedImageLimiterType	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef Superclass::FixedImagePixelType	FixedImagePixelType

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass::ImageSamplerPointer	ImageSamplerPointer

typedef Superclass::ImageSamplerType	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType

typedef Superclass::MovingImageLimiterType	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef Superclass::MovingImageRegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef ParzenWindowMutualInformationImageToImageMetric	Self

typedef ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >	Superclass

typedef Superclass::ThreaderType	ThreaderType

typedef Superclass::ThreadInfoType	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType

typedef Superclass::FixedImageLimiterType	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef Superclass::FixedImagePixelType	FixedImagePixelType

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass::ImageSamplerPointer	ImageSamplerPointer

typedef Superclass::ImageSamplerType	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType

typedef Superclass::MovingImageLimiterType	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef Superclass::MovingImageRegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef ParzenWindowHistogramImageToImageMetric	Self

typedef AdvancedImageToImageMetric< TFixedImage, TMovingImage >	Superclass

typedef Superclass::ThreaderType	ThreaderType

typedef Superclass::ThreadInfoType	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType

typedef BSplineOrder1TransformType::Pointer	BSplineOrder1TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType

typedef BSplineOrder2TransformType::Pointer	BSplineOrder2TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType

typedef BSplineOrder3TransformType::Pointer	BSplineOrder3TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType

typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension >	CombinationTransformType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType

typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer

typedef LimiterFunctionBase< RealType, FixedImageDimension >	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef ImageMaskSpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskSpatialObject2Type

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef FixedImageType::PixelType	FixedImagePixelType

typedef FixedImageType::Pointer	FixedImagePointer

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef vnl_sparse_matrix< HessianValueType >	HessianType

typedef DerivativeType::ValueType	HessianValueType

typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer

typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType

typedef ImageSamplerType::Pointer	ImageSamplerPointer

typedef ImageSamplerBase< FixedImageType >	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType

typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType

typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer

typedef LimiterFunctionBase< RealType, MovingImageDimension >	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef ImageMaskSpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskSpatialObject2Type

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef MovingImageType::Pointer	MovingImagePointer

typedef MovingImageType::RegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef TransformType::ScalarType	ScalarType

typedef AdvancedImageToImageMetric	Self

typedef ImageToImageMetric< TFixedImage, TMovingImage >	Superclass

typedef itk::PlatformMultiThreader	ThreaderType

typedef ThreaderType::WorkUnitInfo	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Member Functions
virtual const char *	GetClassName () const

virtual bool	GetUseJacobianPreconditioning () const

MeasureType	GetValue (const ParametersType &parameters) const override

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetUseJacobianPreconditioning (bool _arg)

Public Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
virtual const char *	GetClassName () const

void	GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const override

virtual double	GetFiniteDifferencePerturbation () const

virtual unsigned int	GetFixedKernelBSplineOrder () const

virtual unsigned int	GetMovingKernelBSplineOrder () const

virtual unsigned long	GetNumberOfFixedHistogramBins ()

virtual unsigned long	GetNumberOfMovingHistogramBins ()

virtual bool	GetUseDerivative () const

virtual const bool &	GetUseExplicitPDFDerivatives ()

virtual bool	GetUseFiniteDifferenceDerivative () const

void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetFiniteDifferencePerturbation (double _arg)

virtual void	SetFixedKernelBSplineOrder (unsigned int _arg)

virtual void	SetMovingKernelBSplineOrder (unsigned int _arg)

virtual void	SetNumberOfFixedHistogramBins (unsigned long _arg)

virtual void	SetNumberOfMovingHistogramBins (unsigned long _arg)

virtual void	SetUseDerivative (bool _arg)

virtual void	SetUseExplicitPDFDerivatives (bool _arg)

virtual void	SetUseFiniteDifferenceDerivative (bool _arg)

virtual void	UseExplicitPDFDerivativesOff ()

virtual void	UseExplicitPDFDerivativesOn ()

Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const char *	GetClassName () const

virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

virtual double	GetFixedLimitRangeRatio () const

virtual ImageSamplerType *	GetImageSampler (void) const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const

virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const

const AdvancedTransformType *	GetTransform (void) const override

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual const bool &	GetUseMetricSingleThreaded ()

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

virtual const bool &	GetUseMultiThread ()

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

virtual void	SetUseMultiThread (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

virtual void	UseMultiThreadOff ()

virtual void	UseMultiThreadOn ()

Static Public Member Functions
static Pointer	New ()

Protected Types
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType

typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType

typedef Superclass::FixedImageIndexType	FixedImageIndexType

typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType

typedef Superclass::FixedImagePointType	FixedImagePointType

typedef Superclass::IncrementalMarginalPDFType	IncrementalMarginalPDFType

typedef Superclass::JointPDFDerivativesIndexType	JointPDFDerivativesIndexType

typedef Superclass::JointPDFDerivativesRegionType	JointPDFDerivativesRegionType

typedef Superclass::JointPDFDerivativesSizeType	JointPDFDerivativesSizeType

typedef Superclass::JointPDFDerivativesType	JointPDFDerivativesType

typedef Superclass::JointPDFIndexType	JointPDFIndexType

typedef Superclass::JointPDFRegionType	JointPDFRegionType

typedef Superclass::JointPDFSizeType	JointPDFSizeType

typedef Superclass::JointPDFType	JointPDFType

typedef Superclass::KernelFunctionType	KernelFunctionType

typedef Superclass::MarginalPDFType	MarginalPDFType

typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType

typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType

typedef Superclass::MovingImageIndexType	MovingImageIndexType

typedef Superclass::MovingImagePointType	MovingImagePointType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::ParzenValueContainerType	ParzenValueContainerType

typedef Superclass::PDFDerivativeValueType	PDFDerivativeValueType

typedef Superclass::PDFValueType	PDFValueType

Protected Types inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType

typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType

typedef Superclass::FixedImageIndexType	FixedImageIndexType

typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType

typedef Superclass::FixedImagePointType	FixedImagePointType

typedef IncrementalMarginalPDFType::IndexType	IncrementalMarginalPDFIndexType

typedef IncrementalMarginalPDFType::Pointer	IncrementalMarginalPDFPointer

typedef IncrementalMarginalPDFType::RegionType	IncrementalMarginalPDFRegionType

typedef IncrementalMarginalPDFType::SizeType	IncrementalMarginalPDFSizeType

typedef Image< PDFValueType, 2 >	IncrementalMarginalPDFType

typedef JointPDFDerivativesType::IndexType	JointPDFDerivativesIndexType

typedef JointPDFDerivativesType::Pointer	JointPDFDerivativesPointer

typedef JointPDFDerivativesType::RegionType	JointPDFDerivativesRegionType

typedef JointPDFDerivativesType::SizeType	JointPDFDerivativesSizeType

typedef Image< PDFDerivativeValueType, 3 >	JointPDFDerivativesType

typedef JointPDFType::IndexType	JointPDFIndexType

typedef JointPDFType::Pointer	JointPDFPointer

typedef JointPDFType::RegionType	JointPDFRegionType

typedef JointPDFType::SizeType	JointPDFSizeType

typedef Image< PDFValueType, 2 >	JointPDFType

typedef KernelFunctionType::Pointer	KernelFunctionPointer

typedef KernelFunctionBase2< PDFValueType >	KernelFunctionType

typedef Array< PDFValueType >	MarginalPDFType

typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType

typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType

typedef Superclass::MovingImageIndexType	MovingImageIndexType

typedef Superclass::MovingImagePointType	MovingImagePointType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef FixedImageType::OffsetValueType	OffsetValueType

typedef Array< PDFValueType >	ParzenValueContainerType

typedef float	PDFDerivativeValueType

typedef double	PDFValueType

Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer

typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType

typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer

typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType

typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer

typedef GradientImageFilter< MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType

typedef FixedImageType::IndexType	FixedImageIndexType

typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType

typedef TransformType::InputPointType	FixedImagePointType

typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer

typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType

typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType

typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType

typedef MovingImageType::IndexType	MovingImageIndexType

typedef TransformType::OutputPointType	MovingImagePointType

typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer

typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType

Protected Member Functions
void	AfterThreadedComputeDerivativeLowMemory (DerivativeType &derivative) const

virtual void	ComputeJacobianPreconditioner (const TransformJacobianType &jac, const NonZeroJacobianIndicesType &nzji, DerivativeType &preconditioner, DerivativeType &divisor) const

void	GetValueAndAnalyticDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

virtual void	GetValueAndAnalyticDerivativeLowMemory (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

void	GetValueAndFiniteDifferenceDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

void	InitializeHistograms (void) override

void	LaunchComputeDerivativeLowMemoryThreaderCallback (void) const

	ParzenWindowMutualInformationImageToImageMetric ()

void	ThreadedComputeDerivativeLowMemory (ThreadIdType threadId)

	~ParzenWindowMutualInformationImageToImageMetric () override

Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
void	AfterThreadedComputePDFs (void) const

virtual void	ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType incrementalPDF, IncrementalMarginalPDFType fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const

virtual void	ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, const unsigned int &direction) const

virtual void	ComputePDFs (const ParametersType &parameters) const

virtual void	ComputePDFsAndIncrementalPDFs (const ParametersType &parameters) const

virtual void	ComputePDFsAndPDFDerivatives (const ParametersType &parameters) const

virtual void	ComputePDFsSingleThreaded (const ParametersType &parameters) const

void	EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const

virtual void	GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const

virtual void	GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const

virtual void	InitializeHistograms (void)

virtual void	InitializeKernels (void)

void	InitializeThreadingParameters (void) const override

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct, AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, ParzenWindowHistogramGetValueAndDerivativePerThreadStruct, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)

void	LaunchComputePDFsThreaderCallback (void) const

virtual void	NormalizeJointPDF (JointPDFType *pdf, const double &factor) const

virtual void	NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, const double &factor) const

	ParzenWindowHistogramImageToImageMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const override

void	ThreadedComputePDFs (ThreadIdType threadId)

virtual void	UpdateJointPDFAndDerivatives (const RealType &fixedImageValue, const RealType &movingImageValue, const DerivativeType imageJacobian, const NonZeroJacobianIndicesType nzji, JointPDFType *jointPDF) const

virtual void	UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const

void	UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const

	~ParzenWindowHistogramImageToImageMetric () override

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
	AdvancedImageToImageMetric ()

virtual void	AfterThreadedGetValue (MeasureType &value) const

virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const

virtual void	CheckForAdvancedTransform (void)

virtual void	CheckForBSplineInterpolator (void)

virtual void	CheckForBSplineTransform (void) const

virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const

virtual void	InitializeImageSampler (void)

virtual void	InitializeLimiters (void)

virtual void	InitializeThreadingParameters (void) const

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)

void	LaunchGetValueAndDerivativeThreaderCallback (void) const

void	LaunchGetValueThreaderCallback (void) const

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual void	ThreadedGetValue (ThreadIdType threadID)

virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)

virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const

	~AdvancedImageToImageMetric () override

Static Protected Member Functions
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ComputeDerivativeLowMemoryThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ComputePDFsThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Protected Attributes
ParzenWindowMutualInformationMultiThreaderParameterType	m_ParzenWindowMutualInformationThreaderParameters

Protected Attributes inherited from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >
double	m_Alpha

KernelFunctionPointer	m_DerivativeMovingKernel

double	m_FixedImageBinSize

MarginalPDFType	m_FixedImageMarginalPDF

double	m_FixedImageNormalizedMin

IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFLeft

IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFRight

KernelFunctionPointer	m_FixedKernel

double	m_FixedParzenTermToIndexOffset

JointPDFDerivativesPointer	m_IncrementalJointPDFLeft

JointPDFDerivativesPointer	m_IncrementalJointPDFRight

JointPDFPointer	m_JointPDF

JointPDFDerivativesPointer	m_JointPDFDerivatives

JointPDFRegionType	m_JointPDFWindow

double	m_MovingImageBinSize

MarginalPDFType	m_MovingImageMarginalPDF

double	m_MovingImageNormalizedMin

IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFLeft

IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFRight

KernelFunctionPointer	m_MovingKernel

double	m_MovingParzenTermToIndexOffset

AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct *	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariables

ThreadIdType	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariablesSize

ParzenWindowHistogramMultiThreaderParameterType	m_ParzenWindowHistogramThreaderParameters

DerivativeType	m_PerturbedAlphaLeft

DerivativeType	m_PerturbedAlphaRight

std::vector< JointPDFPointer >	m_ThreaderJointPDFs

Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer	m_AdvancedTransform

BSplineInterpolatorPointer	m_BSplineInterpolator

BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat

CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter

FixedImageLimiterPointer	m_FixedImageLimiter

FixedImageLimiterOutputType	m_FixedImageMaxLimit

FixedImageLimiterOutputType	m_FixedImageMinLimit

FixedImagePixelType	m_FixedImageTrueMax

FixedImagePixelType	m_FixedImageTrueMin

double	m_FixedLimitRangeRatio

AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables

ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize

AlignedGetValuePerThreadStruct *	m_GetValuePerThreadVariables

ThreadIdType	m_GetValuePerThreadVariablesSize

ImageSamplerPointer	m_ImageSampler

bool	m_InterpolatorIsBSpline

bool	m_InterpolatorIsBSplineFloat

bool	m_InterpolatorIsLinear

bool	m_InterpolatorIsReducedBSpline

LinearInterpolatorPointer	m_LinearInterpolator

MovingImageLimiterPointer	m_MovingImageLimiter

MovingImageLimiterOutputType	m_MovingImageMaxLimit

MovingImageLimiterOutputType	m_MovingImageMinLimit

MovingImagePixelType	m_MovingImageTrueMax

MovingImagePixelType	m_MovingImageTrueMin

double	m_MovingLimitRangeRatio

ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator

MultiThreaderParameterType	m_ThreaderMetricParameters

bool	m_TransformIsAdvanced

bool	m_TransformIsBSpline

bool	m_UseMetricSingleThreaded

bool	m_UseMultiThread

bool	m_UseOpenMP

Private Types
typedef Array2D< PRatioType >	PRatioArrayType

typedef double	PRatioType

Private Member Functions
void	ComputeDerivativeLowMemory (DerivativeType &derivative) const

void	ComputeDerivativeLowMemorySingleThreaded (DerivativeType &derivative) const

void	ComputeValueAndPRatioArray (double &MI) const

void	operator= (const Self &)

	ParzenWindowMutualInformationImageToImageMetric (const Self &)

void	UpdateDerivativeLowMemory (const RealType &fixedImageValue, const RealType &movingImageValue, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji, DerivativeType &derivative) const

Private Attributes
PRatioArrayType	m_PRatioArray

bool	m_UseJacobianPreconditioning

Member Typedef Documentation

◆ BSplineInterpolatorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::BSplineInterpolatorType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType

protected

Definition at line 177 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ CentralDifferenceGradientFilterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::CentralDifferenceGradientFilterType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType

protected

Definition at line 178 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ConstPointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< const Self > itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer

Definition at line 85 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ CoordinateRepresentationType

template<class TFixedImage , class TMovingImage >

typedef Superclass::CoordinateRepresentationType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 97 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ DerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::DerivativeType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType

Definition at line 124 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ DerivativeValueType

template<class TFixedImage , class TMovingImage >

typedef Superclass::DerivativeValueType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeValueType

Definition at line 125 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageConstPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 102 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageIndexType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType

protected

Protected Typedefs Typedefs inherited from superclass

Definition at line 171 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageIndexValueType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageIndexValueType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType

protected

Definition at line 172 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterOutputType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType

Definition at line 137 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType

Definition at line 134 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer

Definition at line 120 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType

Definition at line 119 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePixelType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType

Definition at line 127 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePointType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType

protected

Definition at line 174 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageRegionType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType

Definition at line 103 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ FixedImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType

Definition at line 101 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ GradientImageFilterPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer

Definition at line 118 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ GradientImageFilterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType

Definition at line 117 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ GradientImagePointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImagePointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer

Definition at line 116 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ GradientImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType

Definition at line 115 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ GradientPixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientPixelType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType

Definition at line 114 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ImageSampleContainerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer

Definition at line 133 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ImageSampleContainerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType

Definition at line 131 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ImageSamplerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer

Definition at line 130 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ImageSamplerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType

Definition at line 129 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ IncrementalMarginalPDFType

template<class TFixedImage , class TMovingImage >

typedef Superclass::IncrementalMarginalPDFType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::IncrementalMarginalPDFType

protected

Definition at line 185 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ InputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InputPointType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InputPointType

Definition at line 106 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ InterpolatorPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer

Definition at line 112 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ InterpolatorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

Definition at line 111 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFDerivativesIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFDerivativesIndexType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesIndexType

protected

Definition at line 189 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFDerivativesRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFDerivativesRegionType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesRegionType

protected

Definition at line 190 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFDerivativesSizeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFDerivativesSizeType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesSizeType

protected

Definition at line 191 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFDerivativesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFDerivativesType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesType

protected

Definition at line 184 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFIndexType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFIndexType

protected

Definition at line 186 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFRegionType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFRegionType

protected

Definition at line 187 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFSizeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFSizeType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFSizeType

protected

Definition at line 188 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ JointPDFType

template<class TFixedImage , class TMovingImage >

typedef Superclass::JointPDFType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFType

protected

Definition at line 183 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ KernelFunctionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::KernelFunctionType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KernelFunctionType

protected

Definition at line 193 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MarginalPDFType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MarginalPDFType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MarginalPDFType

protected

Definition at line 182 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MeasureType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MeasureType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasureType

Definition at line 123 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageConstPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 100 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageContinuousIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageContinuousIndexType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType

protected

Definition at line 176 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageDerivativeScalesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageDerivativeScalesType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType

Definition at line 141 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageDerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageDerivativeType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType

protected

Definition at line 179 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageIndexType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType

protected

Definition at line 173 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterOutputType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType

Definition at line 139 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType

Definition at line 135 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer

Definition at line 122 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType

Definition at line 121 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePixelType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType

Definition at line 99 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePointType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType

protected

Definition at line 175 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageRegionType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType

Definition at line 128 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ MovingImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType

Definition at line 98 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ NonZeroJacobianIndicesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::NonZeroJacobianIndicesType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType

protected

Definition at line 194 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ NumberOfParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::NumberOfParametersType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::NumberOfParametersType

Definition at line 110 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ OutputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::OutputPointType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType

Definition at line 107 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParametersType

Definition at line 126 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ParzenValueContainerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParzenValueContainerType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParzenValueContainerType

protected

Definition at line 192 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ PDFDerivativeValueType

template<class TFixedImage , class TMovingImage >

typedef Superclass::PDFDerivativeValueType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PDFDerivativeValueType

protected

Definition at line 181 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ PDFValueType

template<class TFixedImage , class TMovingImage >

typedef Superclass::PDFValueType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PDFValueType

protected

Definition at line 180 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ Pointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< Self > itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Pointer

Definition at line 84 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ PRatioArrayType

template<class TFixedImage , class TMovingImage >

typedef Array2D< PRatioType > itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PRatioArrayType

private

Definition at line 268 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ PRatioType

template<class TFixedImage , class TMovingImage >

typedef double itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PRatioType

private

Helper array for storing the values of the JointPDF ratios.

Definition at line 267 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ RealType

template<class TFixedImage , class TMovingImage >

typedef Superclass::RealType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::RealType

Definition at line 113 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ Self

template<class TFixedImage , class TMovingImage >

typedef ParzenWindowMutualInformationImageToImageMetric itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 81 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ Superclass

template<class TFixedImage , class TMovingImage >

typedef ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage > itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Superclass

Definition at line 83 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ThreaderType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ThreaderType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ThreaderType

Definition at line 142 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ThreadInfoType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ThreadInfoType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ThreadInfoType

Definition at line 143 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ TransformJacobianType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformJacobianType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 109 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ TransformParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformParametersType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType

Definition at line 108 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ TransformPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformPointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer

Definition at line 105 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ TransformType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Definition at line 104 of file itkParzenWindowMutualInformationImageToImageMetric.h.

Constructor & Destructor Documentation

◆ ParzenWindowMutualInformationImageToImageMetric() [1/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParzenWindowMutualInformationImageToImageMetric ( )

protected

The constructor.

◆ ~ParzenWindowMutualInformationImageToImageMetric()

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::~ParzenWindowMutualInformationImageToImageMetric ( )

inlineoverrideprotected

The destructor.

Definition at line 166 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ ParzenWindowMutualInformationImageToImageMetric() [2/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParzenWindowMutualInformationImageToImageMetric ( const Self & )

private

The private constructor.

Member Function Documentation

◆ AfterThreadedComputeDerivativeLowMemory()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::AfterThreadedComputeDerivativeLowMemory ( DerivativeType & derivative ) const

inlineprotected

Single-threadedly accumulate results.

◆ ComputeDerivativeLowMemory()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeDerivativeLowMemory ( DerivativeType & derivative ) const

private

◆ ComputeDerivativeLowMemorySingleThreaded()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeDerivativeLowMemorySingleThreaded ( DerivativeType & derivative ) const

private

Helper function to compute the derivative for the low memory variant.

◆ ComputeDerivativeLowMemoryThreaderCallback()

template<class TFixedImage , class TMovingImage >

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeDerivativeLowMemoryThreaderCallback ( void * arg )

staticprotected

Helper function to launch the threads.

◆ ComputeJacobianPreconditioner()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeJacobianPreconditioner	(	const TransformJacobianType &	jac,
		const NonZeroJacobianIndicesType &	nzji,
		DerivativeType &	preconditioner,
		DerivativeType &	divisor
	)		const

protectedvirtual

Compute terms to implement preconditioning as proposed by Tustison et al.

◆ ComputeValueAndPRatioArray()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeValueAndPRatioArray ( double & MI ) const

private

Helper function to compute m_PRatioArray in case of low memory consumption.

◆ GetClassName()

template<class TFixedImage , class TMovingImage >

virtual const char * itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::AdvancedMattesMutualInformationMetric< TElastix >.

◆ GetUseJacobianPreconditioning()

template<class TFixedImage , class TMovingImage >

virtual bool itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetUseJacobianPreconditioning ( ) const

virtual

Set/get whether to apply the technique introduced by Nicholas Tustison; default: false

◆ GetValue()

template<class TFixedImage , class TMovingImage >

MeasureType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const ParametersType & parameters ) const

override

Get the value.

◆ GetValueAndAnalyticDerivative()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndAnalyticDerivative	(	const ParametersType &	parameters,
		MeasureType &	value,
		DerivativeType &	derivative
	)		const

overrideprotectedvirtual

Get the value and analytic derivative. Called by GetValueAndDerivative if UseFiniteDifferenceDerivative == false.

Implements a version that only loops once over the samples, but uses a large block of memory to explicitly store the joint histogram derivative. It's size is #FixedHistogramBins * #MovingHistogramBins * #parameters * float.

Reimplemented from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ GetValueAndAnalyticDerivativeLowMemory()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndAnalyticDerivativeLowMemory	(	const ParametersType &	parameters,
		MeasureType &	value,
		DerivativeType &	derivative
	)		const

protectedvirtual

Get the value and analytic derivative. Called by GetValueAndDerivative if UseFiniteDifferenceDerivative == false and UseExplicitPDFDerivatives == false.

Implements a version that avoids the large memory allocation of the explicit joint histogram derivative. This comes at the cost of looping over the samples twice, instead of once. The first time does not require GetJacobian() and moving image derivatives, however.

◆ GetValueAndFiniteDifferenceDerivative()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndFiniteDifferenceDerivative	(	const ParametersType &	parameters,
		MeasureType &	value,
		DerivativeType &	derivative
	)		const

overrideprotectedvirtual

Get the value and finite difference derivative. Called by GetValueAndDerivative if UseFiniteDifferenceDerivative == true.

This is really only here for experimental purposes.

Reimplemented from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ InitializeHistograms()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InitializeHistograms ( void )

overrideprotectedvirtual

Some initialization functions, called by Initialize.

Reimplemented from itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ itkStaticConstMacro() [1/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

◆ LaunchComputeDerivativeLowMemoryThreaderCallback()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::LaunchComputeDerivativeLowMemoryThreaderCallback ( void ) const

protected

Helper function to launch the threads.

◆ New()

template<class TFixedImage , class TMovingImage >

static Pointer itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

◆ operator=()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::operator= ( const Self & )

private

The private copy constructor.

◆ SetUseJacobianPreconditioning()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetUseJacobianPreconditioning ( bool _arg )

virtual

◆ ThreadedComputeDerivativeLowMemory()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ThreadedComputeDerivativeLowMemory ( ThreadIdType threadId )

inlineprotected

Multi-threaded versions of the ComputePDF function.

◆ UpdateDerivativeLowMemory()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::UpdateDerivativeLowMemory	(	const RealType &	fixedImageValue,
		const RealType &	movingImageValue,
		const DerivativeType &	imageJacobian,
		const NonZeroJacobianIndicesType &	nzji,
		DerivativeType &	derivative
	)		const

private

Helper function to update the derivative for the low memory variant.

Field Documentation

◆ m_ParzenWindowMutualInformationThreaderParameters

template<class TFixedImage , class TMovingImage >

ParzenWindowMutualInformationMultiThreaderParameterType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_ParzenWindowMutualInformationThreaderParameters

protected

Definition at line 244 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ m_PRatioArray

template<class TFixedImage , class TMovingImage >

PRatioArrayType itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_PRatioArray

mutableprivate

Definition at line 269 of file itkParzenWindowMutualInformationImageToImageMetric.h.

◆ m_UseJacobianPreconditioning

template<class TFixedImage , class TMovingImage >

bool itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_UseJacobianPreconditioning

private

Setting

Definition at line 272 of file itkParzenWindowMutualInformationImageToImageMetric.h.

Detailed Description

Data Structures

Public Types

Public Member Functions

Static Public Member Functions

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Private Types

Private Member Functions

Private Attributes

Member Typedef Documentation

◆ BSplineInterpolatorType

◆ CentralDifferenceGradientFilterType

◆ ConstPointer

◆ CoordinateRepresentationType

◆ DerivativeType

◆ DerivativeValueType

◆ FixedImageConstPointer

◆ FixedImageIndexType

◆ FixedImageIndexValueType

◆ FixedImageLimiterOutputType

◆ FixedImageLimiterType

◆ FixedImageMaskPointer

◆ FixedImageMaskType

◆ FixedImagePixelType

◆ FixedImagePointType

◆ FixedImageRegionType

◆ FixedImageType

◆ GradientImageFilterPointer

◆ GradientImageFilterType

◆ GradientImagePointer

◆ GradientImageType

◆ GradientPixelType

◆ ImageSampleContainerPointer

◆ ImageSampleContainerType

◆ ImageSamplerPointer

◆ ImageSamplerType

◆ IncrementalMarginalPDFType

◆ InputPointType

◆ InterpolatorPointer

◆ InterpolatorType

◆ JointPDFDerivativesIndexType

◆ JointPDFDerivativesRegionType

◆ JointPDFDerivativesSizeType

◆ JointPDFDerivativesType

◆ JointPDFIndexType

◆ JointPDFRegionType

◆ JointPDFSizeType

◆ JointPDFType

◆ KernelFunctionType

◆ MarginalPDFType

◆ MeasureType

◆ MovingImageConstPointer

◆ MovingImageContinuousIndexType

◆ MovingImageDerivativeScalesType

◆ MovingImageDerivativeType

◆ MovingImageIndexType

◆ MovingImageLimiterOutputType

◆ MovingImageLimiterType

◆ MovingImageMaskPointer

◆ MovingImageMaskType

◆ MovingImagePixelType

◆ MovingImagePointType

◆ MovingImageRegionType

◆ MovingImageType

◆ NonZeroJacobianIndicesType

◆ NumberOfParametersType

◆ OutputPointType

◆ ParametersType

◆ ParzenValueContainerType

◆ PDFDerivativeValueType

◆ PDFValueType

◆ Pointer

◆ PRatioArrayType

◆ PRatioType

◆ RealType

◆ Self

◆ Superclass