#include <itkParzenWindowHistogramImageToImageMetric.h>

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >

A base class for image metrics based on a joint histogram computed using Parzen Windowing.

The calculations are based on the method of Mattes/Thevenaz/Unser [1,2,3] where the probability density distribution are estimated using Parzen histograms.

Once the PDF's have been constructed, the metric value and derivative can be computed. Inheriting classes should make sure to call the function ComputePDFs(AndPDFDerivatives) before using m_JointPDF and m_Alpha (and m_JointPDFDerivatives).

This class does not define the GetValue/GetValueAndDerivative methods. This is the task of inheriting classes.

The code is based on the itk::MattesMutualInformationImageToImageMetric, but largely rewritten. Some important features:

It inherits from AdvancedImageToImageMetric, which provides a lot of general functionality.
It splits up some functions in subfunctions.
The Parzen window order can be chosen.
A fixed and moving number of histogram bins can be chosen.
More use of iterators instead of raw buffer pointers.
An optional FiniteDifference derivative estimation.

Warning: This class is not thread safe due the member data structures used to the store the sampled points and the marginal and joint pdfs.

References:
[1] "Nonrigid multimodality image registration"
D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank
Medical Imaging 2001: Image Processing, 2001, pp. 1609-1620.
[2] "PET-CT Image Registration in the Chest Using Free-form Deformations"
D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank
IEEE Transactions in Medical Imaging. To Appear.
[3] "Optimization of Mutual Information for MultiResolution Image Registration"
P. Thevenaz and M. Unser
IEEE Transactions in Image Processing, 9(12) December 2000.

Definition at line 74 of file itkParzenWindowHistogramImageToImageMetric.h.

Inheritance diagram for itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >:

Data Structures
struct	ParzenWindowHistogramGetValueAndDerivativePerThreadStruct

struct	ParzenWindowHistogramMultiThreaderParameterType

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType

typedef Superclass::FixedImageLimiterType	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef Superclass::FixedImagePixelType	FixedImagePixelType

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass::ImageSamplerPointer	ImageSamplerPointer

typedef Superclass::ImageSamplerType	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType

typedef Superclass::MovingImageLimiterType	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef Superclass::MovingImageRegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef ParzenWindowHistogramImageToImageMetric	Self

typedef AdvancedImageToImageMetric< TFixedImage, TMovingImage >	Superclass

typedef Superclass::ThreaderType	ThreaderType

typedef Superclass::ThreadInfoType	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType

typedef BSplineOrder1TransformType::Pointer	BSplineOrder1TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType

typedef BSplineOrder2TransformType::Pointer	BSplineOrder2TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType

typedef BSplineOrder3TransformType::Pointer	BSplineOrder3TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType

typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension >	CombinationTransformType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType

typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer

typedef LimiterFunctionBase< RealType, FixedImageDimension >	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef ImageMaskSpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskSpatialObject2Type

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef FixedImageType::PixelType	FixedImagePixelType

typedef FixedImageType::Pointer	FixedImagePointer

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef vnl_sparse_matrix< HessianValueType >	HessianType

typedef DerivativeType::ValueType	HessianValueType

typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer

typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType

typedef ImageSamplerType::Pointer	ImageSamplerPointer

typedef ImageSamplerBase< FixedImageType >	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType

typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType

typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer

typedef LimiterFunctionBase< RealType, MovingImageDimension >	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef ImageMaskSpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskSpatialObject2Type

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef MovingImageType::Pointer	MovingImagePointer

typedef MovingImageType::RegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef TransformType::ScalarType	ScalarType

typedef AdvancedImageToImageMetric	Self

typedef ImageToImageMetric< TFixedImage, TMovingImage >	Superclass

typedef itk::PlatformMultiThreader	ThreaderType

typedef ThreaderType::WorkUnitInfo	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Member Functions
virtual const char *	GetClassName () const

void	GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const override

virtual double	GetFiniteDifferencePerturbation () const

virtual unsigned int	GetFixedKernelBSplineOrder () const

virtual unsigned int	GetMovingKernelBSplineOrder () const

virtual unsigned long	GetNumberOfFixedHistogramBins ()

virtual unsigned long	GetNumberOfMovingHistogramBins ()

virtual bool	GetUseDerivative () const

virtual const bool &	GetUseExplicitPDFDerivatives ()

virtual bool	GetUseFiniteDifferenceDerivative () const

void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetFiniteDifferencePerturbation (double _arg)

virtual void	SetFixedKernelBSplineOrder (unsigned int _arg)

virtual void	SetMovingKernelBSplineOrder (unsigned int _arg)

virtual void	SetNumberOfFixedHistogramBins (unsigned long _arg)

virtual void	SetNumberOfMovingHistogramBins (unsigned long _arg)

virtual void	SetUseDerivative (bool _arg)

virtual void	SetUseExplicitPDFDerivatives (bool _arg)

virtual void	SetUseFiniteDifferenceDerivative (bool _arg)

virtual void	UseExplicitPDFDerivativesOff ()

virtual void	UseExplicitPDFDerivativesOn ()

Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const char *	GetClassName () const

virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

virtual double	GetFixedLimitRangeRatio () const

virtual ImageSamplerType *	GetImageSampler (void) const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const

virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const

const AdvancedTransformType *	GetTransform (void) const override

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual const bool &	GetUseMetricSingleThreaded ()

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

virtual const bool &	GetUseMultiThread ()

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

virtual void	SetUseMultiThread (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

virtual void	UseMultiThreadOff ()

virtual void	UseMultiThreadOn ()

Protected Types
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType

typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType

typedef Superclass::FixedImageIndexType	FixedImageIndexType

typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType

typedef Superclass::FixedImagePointType	FixedImagePointType

typedef IncrementalMarginalPDFType::IndexType	IncrementalMarginalPDFIndexType

typedef IncrementalMarginalPDFType::Pointer	IncrementalMarginalPDFPointer

typedef IncrementalMarginalPDFType::RegionType	IncrementalMarginalPDFRegionType

typedef IncrementalMarginalPDFType::SizeType	IncrementalMarginalPDFSizeType

typedef Image< PDFValueType, 2 >	IncrementalMarginalPDFType

typedef JointPDFDerivativesType::IndexType	JointPDFDerivativesIndexType

typedef JointPDFDerivativesType::Pointer	JointPDFDerivativesPointer

typedef JointPDFDerivativesType::RegionType	JointPDFDerivativesRegionType

typedef JointPDFDerivativesType::SizeType	JointPDFDerivativesSizeType

typedef Image< PDFDerivativeValueType, 3 >	JointPDFDerivativesType

typedef JointPDFType::IndexType	JointPDFIndexType

typedef JointPDFType::Pointer	JointPDFPointer

typedef JointPDFType::RegionType	JointPDFRegionType

typedef JointPDFType::SizeType	JointPDFSizeType

typedef Image< PDFValueType, 2 >	JointPDFType

typedef KernelFunctionType::Pointer	KernelFunctionPointer

typedef KernelFunctionBase2< PDFValueType >	KernelFunctionType

typedef Array< PDFValueType >	MarginalPDFType

typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType

typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType

typedef Superclass::MovingImageIndexType	MovingImageIndexType

typedef Superclass::MovingImagePointType	MovingImagePointType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef FixedImageType::OffsetValueType	OffsetValueType

typedef Array< PDFValueType >	ParzenValueContainerType

typedef float	PDFDerivativeValueType

typedef double	PDFValueType

Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer

typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType

typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer

typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType

typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer

typedef GradientImageFilter< MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType

typedef FixedImageType::IndexType	FixedImageIndexType

typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType

typedef TransformType::InputPointType	FixedImagePointType

typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer

typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType

typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType

typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType

typedef MovingImageType::IndexType	MovingImageIndexType

typedef TransformType::OutputPointType	MovingImagePointType

typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer

typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType

Protected Member Functions
void	AfterThreadedComputePDFs (void) const

virtual void	ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType incrementalPDF, IncrementalMarginalPDFType fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const

virtual void	ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, const unsigned int &direction) const

virtual void	ComputePDFs (const ParametersType &parameters) const

virtual void	ComputePDFsAndIncrementalPDFs (const ParametersType &parameters) const

virtual void	ComputePDFsAndPDFDerivatives (const ParametersType &parameters) const

virtual void	ComputePDFsSingleThreaded (const ParametersType &parameters) const

void	EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const

virtual void	GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const

virtual void	GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const

virtual void	InitializeHistograms (void)

virtual void	InitializeKernels (void)

void	InitializeThreadingParameters (void) const override

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct, AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, ParzenWindowHistogramGetValueAndDerivativePerThreadStruct, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)

void	LaunchComputePDFsThreaderCallback (void) const

virtual void	NormalizeJointPDF (JointPDFType *pdf, const double &factor) const

virtual void	NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, const double &factor) const

	ParzenWindowHistogramImageToImageMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const override

void	ThreadedComputePDFs (ThreadIdType threadId)

virtual void	UpdateJointPDFAndDerivatives (const RealType &fixedImageValue, const RealType &movingImageValue, const DerivativeType imageJacobian, const NonZeroJacobianIndicesType nzji, JointPDFType *jointPDF) const

virtual void	UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const

void	UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const

	~ParzenWindowHistogramImageToImageMetric () override

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
	AdvancedImageToImageMetric ()

virtual void	AfterThreadedGetValue (MeasureType &value) const

virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const

virtual void	CheckForAdvancedTransform (void)

virtual void	CheckForBSplineInterpolator (void)

virtual void	CheckForBSplineTransform (void) const

virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const

virtual void	InitializeImageSampler (void)

virtual void	InitializeLimiters (void)

virtual void	InitializeThreadingParameters (void) const

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)

void	LaunchGetValueAndDerivativeThreaderCallback (void) const

void	LaunchGetValueThreaderCallback (void) const

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual void	ThreadedGetValue (ThreadIdType threadID)

virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)

virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const

	~AdvancedImageToImageMetric () override

Static Protected Member Functions
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ComputePDFsThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Protected Attributes
double	m_Alpha

KernelFunctionPointer	m_DerivativeMovingKernel

double	m_FixedImageBinSize

MarginalPDFType	m_FixedImageMarginalPDF

double	m_FixedImageNormalizedMin

IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFLeft

IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFRight

KernelFunctionPointer	m_FixedKernel

double	m_FixedParzenTermToIndexOffset

JointPDFDerivativesPointer	m_IncrementalJointPDFLeft

JointPDFDerivativesPointer	m_IncrementalJointPDFRight

JointPDFPointer	m_JointPDF

JointPDFDerivativesPointer	m_JointPDFDerivatives

JointPDFRegionType	m_JointPDFWindow

double	m_MovingImageBinSize

MarginalPDFType	m_MovingImageMarginalPDF

double	m_MovingImageNormalizedMin

IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFLeft

IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFRight

KernelFunctionPointer	m_MovingKernel

double	m_MovingParzenTermToIndexOffset

AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct *	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariables

ThreadIdType	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariablesSize

ParzenWindowHistogramMultiThreaderParameterType	m_ParzenWindowHistogramThreaderParameters

DerivativeType	m_PerturbedAlphaLeft

DerivativeType	m_PerturbedAlphaRight

std::vector< JointPDFPointer >	m_ThreaderJointPDFs

Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer	m_AdvancedTransform

BSplineInterpolatorPointer	m_BSplineInterpolator

BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat

CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter

FixedImageLimiterPointer	m_FixedImageLimiter

FixedImageLimiterOutputType	m_FixedImageMaxLimit

FixedImageLimiterOutputType	m_FixedImageMinLimit

FixedImagePixelType	m_FixedImageTrueMax

FixedImagePixelType	m_FixedImageTrueMin

double	m_FixedLimitRangeRatio

AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables

ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize

AlignedGetValuePerThreadStruct *	m_GetValuePerThreadVariables

ThreadIdType	m_GetValuePerThreadVariablesSize

ImageSamplerPointer	m_ImageSampler

bool	m_InterpolatorIsBSpline

bool	m_InterpolatorIsBSplineFloat

bool	m_InterpolatorIsLinear

bool	m_InterpolatorIsReducedBSpline

LinearInterpolatorPointer	m_LinearInterpolator

MovingImageLimiterPointer	m_MovingImageLimiter

MovingImageLimiterOutputType	m_MovingImageMaxLimit

MovingImageLimiterOutputType	m_MovingImageMinLimit

MovingImagePixelType	m_MovingImageTrueMax

MovingImagePixelType	m_MovingImageTrueMin

double	m_MovingLimitRangeRatio

ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator

MultiThreaderParameterType	m_ThreaderMetricParameters

bool	m_TransformIsAdvanced

bool	m_TransformIsBSpline

bool	m_UseMetricSingleThreaded

bool	m_UseMultiThread

bool	m_UseOpenMP

Private Member Functions
void	operator= (const Self &)

	ParzenWindowHistogramImageToImageMetric (const Self &)

Private Attributes
double	m_FiniteDifferencePerturbation

unsigned int	m_FixedKernelBSplineOrder

unsigned int	m_MovingKernelBSplineOrder

unsigned long	m_NumberOfFixedHistogramBins

unsigned long	m_NumberOfMovingHistogramBins

bool	m_UseDerivative

bool	m_UseExplicitPDFDerivatives

bool	m_UseFiniteDifferenceDerivative

Member Typedef Documentation

◆ BSplineInterpolatorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::BSplineInterpolatorType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType

protected

Definition at line 239 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ CentralDifferenceGradientFilterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::CentralDifferenceGradientFilterType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType

protected

Definition at line 241 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ConstPointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< const Self > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer

Definition at line 83 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ CoordinateRepresentationType

template<class TFixedImage , class TMovingImage >

typedef Superclass::CoordinateRepresentationType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 89 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ DerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::DerivativeType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType

Definition at line 115 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ DerivativeValueType

template<class TFixedImage , class TMovingImage >

typedef Superclass::DerivativeValueType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::DerivativeValueType

Definition at line 116 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageConstPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 94 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageIndexType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType

protected

Protected Typedefs Typedefs inherited from superclass.

Definition at line 232 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageIndexValueType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageIndexValueType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType

protected

Definition at line 233 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterOutputType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterOutputType

Definition at line 126 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageLimiterType

Definition at line 124 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer

Definition at line 111 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType

Definition at line 110 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePixelType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType

Definition at line 118 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePointType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType

protected

Definition at line 236 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageRegionType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType

Definition at line 95 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ FixedImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType

Definition at line 93 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ GradientImageFilterPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer

Definition at line 109 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ GradientImageFilterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType

Definition at line 108 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ GradientImagePointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImagePointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer

Definition at line 107 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ GradientImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType

Definition at line 106 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ GradientPixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientPixelType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType

Definition at line 105 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ImageSampleContainerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerPointer

Definition at line 123 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ImageSampleContainerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ImageSampleContainerType

Definition at line 122 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ImageSamplerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerPointer

Definition at line 121 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ImageSamplerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ImageSamplerType

Definition at line 120 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ IncrementalMarginalPDFIndexType

template<class TFixedImage , class TMovingImage >

typedef IncrementalMarginalPDFType::IndexType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::IncrementalMarginalPDFIndexType

protected

Definition at line 260 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ IncrementalMarginalPDFPointer

template<class TFixedImage , class TMovingImage >

typedef IncrementalMarginalPDFType::Pointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::IncrementalMarginalPDFPointer

protected

Definition at line 253 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ IncrementalMarginalPDFRegionType

template<class TFixedImage , class TMovingImage >

typedef IncrementalMarginalPDFType::RegionType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::IncrementalMarginalPDFRegionType

protected

Definition at line 261 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ IncrementalMarginalPDFSizeType

template<class TFixedImage , class TMovingImage >

typedef IncrementalMarginalPDFType::SizeType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::IncrementalMarginalPDFSizeType

protected

Definition at line 262 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ IncrementalMarginalPDFType

template<class TFixedImage , class TMovingImage >

typedef Image< PDFValueType, 2 > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::IncrementalMarginalPDFType

protected

Definition at line 252 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ InputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InputPointType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::InputPointType

Definition at line 98 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ InterpolatorPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer

Definition at line 103 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ InterpolatorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

Definition at line 102 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFDerivativesIndexType

template<class TFixedImage , class TMovingImage >

typedef JointPDFDerivativesType::IndexType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesIndexType

protected

Definition at line 257 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFDerivativesPointer

template<class TFixedImage , class TMovingImage >

typedef JointPDFDerivativesType::Pointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesPointer

protected

Definition at line 251 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFDerivativesRegionType

template<class TFixedImage , class TMovingImage >

typedef JointPDFDerivativesType::RegionType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesRegionType

protected

Definition at line 258 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFDerivativesSizeType

template<class TFixedImage , class TMovingImage >

typedef JointPDFDerivativesType::SizeType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesSizeType

protected

Definition at line 259 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFDerivativesType

template<class TFixedImage , class TMovingImage >

typedef Image< PDFDerivativeValueType, 3 > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesType

protected

Definition at line 250 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFIndexType

template<class TFixedImage , class TMovingImage >

typedef JointPDFType::IndexType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFIndexType

protected

Definition at line 254 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFPointer

template<class TFixedImage , class TMovingImage >

typedef JointPDFType::Pointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFPointer

protected

Definition at line 249 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFRegionType

template<class TFixedImage , class TMovingImage >

typedef JointPDFType::RegionType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFRegionType

protected

Definition at line 255 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFSizeType

template<class TFixedImage , class TMovingImage >

typedef JointPDFType::SizeType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFSizeType

protected

Definition at line 256 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ JointPDFType

template<class TFixedImage , class TMovingImage >

typedef Image< PDFValueType, 2 > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::JointPDFType

protected

Definition at line 248 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ KernelFunctionPointer

template<class TFixedImage , class TMovingImage >

typedef KernelFunctionType::Pointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::KernelFunctionPointer

protected

Definition at line 267 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ KernelFunctionType

template<class TFixedImage , class TMovingImage >

typedef KernelFunctionBase2< PDFValueType > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::KernelFunctionType

protected

Typedefs for Parzen kernel.

Definition at line 266 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MarginalPDFType

template<class TFixedImage , class TMovingImage >

typedef Array< PDFValueType > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MarginalPDFType

protected

Definition at line 247 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MeasureType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MeasureType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasureType

Definition at line 114 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageConstPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 92 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageContinuousIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageContinuousIndexType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType

protected

Definition at line 238 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageDerivativeScalesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageDerivativeScalesType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType

Definition at line 128 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageDerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageDerivativeType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType

protected

Definition at line 240 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageIndexType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType

protected

Definition at line 235 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterOutputType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterOutputType

Definition at line 127 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageLimiterType

Definition at line 125 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer

Definition at line 113 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType

Definition at line 112 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePixelType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType

Definition at line 91 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePointType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType

protected

Definition at line 237 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageRegionType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageRegionType

Definition at line 119 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ MovingImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType

Definition at line 90 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ NonZeroJacobianIndicesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::NonZeroJacobianIndicesType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType

protected

Definition at line 242 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ OffsetValueType

template<class TFixedImage , class TMovingImage >

typedef FixedImageType::OffsetValueType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::OffsetValueType

protected

Definition at line 234 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ OutputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::OutputPointType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType

Definition at line 99 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ParametersType

Definition at line 117 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ParzenValueContainerType

template<class TFixedImage , class TMovingImage >

typedef Array< PDFValueType > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ParzenValueContainerType

protected

Definition at line 263 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ PDFDerivativeValueType

template<class TFixedImage , class TMovingImage >

typedef float itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::PDFDerivativeValueType

protected

Definition at line 246 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ PDFValueType

template<class TFixedImage , class TMovingImage >

typedef double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::PDFValueType

protected

Typedefs for the PDFs and PDF derivatives.

Definition at line 245 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ Pointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< Self > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::Pointer

Definition at line 82 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ RealType

template<class TFixedImage , class TMovingImage >

typedef Superclass::RealType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::RealType

Definition at line 104 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ Self

template<class TFixedImage , class TMovingImage >

typedef ParzenWindowHistogramImageToImageMetric itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 80 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ Superclass

template<class TFixedImage , class TMovingImage >

typedef AdvancedImageToImageMetric< TFixedImage, TMovingImage > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::Superclass

Definition at line 81 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ThreaderType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ThreaderType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ThreaderType

Definition at line 129 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ ThreadInfoType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ThreadInfoType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ThreadInfoType

Definition at line 130 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ TransformJacobianType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformJacobianType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 101 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ TransformParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformParametersType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType

Definition at line 100 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ TransformPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer

Definition at line 97 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ TransformType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Definition at line 96 of file itkParzenWindowHistogramImageToImageMetric.h.

Constructor & Destructor Documentation

◆ ParzenWindowHistogramImageToImageMetric() [1/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ParzenWindowHistogramImageToImageMetric ( )

protected

The constructor.

◆ ~ParzenWindowHistogramImageToImageMetric()

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::~ParzenWindowHistogramImageToImageMetric ( )

overrideprotected

The destructor.

◆ ParzenWindowHistogramImageToImageMetric() [2/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ParzenWindowHistogramImageToImageMetric ( const Self & )

private

The private constructor.

Member Function Documentation

◆ AfterThreadedComputePDFs()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::AfterThreadedComputePDFs ( void ) const

inlineprotected

Single-threadedly accumulate results.

◆ ComputeIncrementalMarginalPDFs()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeIncrementalMarginalPDFs	(	const JointPDFDerivativesType *	incrementalPDF,
		IncrementalMarginalPDFType *	fixedIncrementalMarginalPDF,
		IncrementalMarginalPDFType *	movingIncrementalMarginalPDF
	)		const

protectedvirtual

Compute incremental marginal pdfs. Integrates the incremental PDF to obtain the fixed and moving marginal pdfs at once.

◆ ComputeMarginalPDF()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeMarginalPDF	(	const JointPDFType *	jointPDF,
		MarginalPDFType &	marginalPDF,
		const unsigned int &	direction
	)		const

protectedvirtual

Compute marginal pdfs by summing over the joint pdf direction = 0: fixed marginal pdf direction = 1: moving marginal pdf

◆ ComputePDFs()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputePDFs ( const ParametersType & parameters ) const

protectedvirtual

◆ ComputePDFsAndIncrementalPDFs()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputePDFsAndIncrementalPDFs ( const ParametersType & parameters ) const

protectedvirtual

Compute PDFs and incremental pdfs (which you can use to compute finite difference estimate of the derivative). Loops over the fixed image samples and constructs the m_JointPDF, m_IncrementalJointPDF<Right/Left>, m_Alpha, and m_PerturbedAlpha<Right/Left>.

mu = input parameters vector jh(mu) = m_JointPDF(:,:) = joint histogram ihr(k) = m_IncrementalJointPDFRight(k,:,:) ihl(k) = m_IncrementalJointPDFLeft(k,:,:) a(mu) = m_Alpha par(k) = m_PerturbedAlphaRight(k) pal(k) = m_PerturbedAlphaLeft(k) size(ihr) = = size(ihl) = nrofparams * nrofmovingbins * nroffixedbins

ihr and ihl are determined such that: jh(mu+delta*e_k) = jh(mu) + ihr(k) jh(mu-delta*e_k) = jh(mu) + ihl(k) where e_k is the unit vector.

the pdf can be derived with: p(mu+delta*e_k) = ( par(k) ) * jh(mu+delta*e_k) p(mu-delta*e_k) = ( pal(k) ) * jh(mu-delta*e_k)

◆ ComputePDFsAndPDFDerivatives()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputePDFsAndPDFDerivatives ( const ParametersType & parameters ) const

protectedvirtual

Compute PDFs and pdf derivatives; Loops over the fixed image samples and constructs the m_JointPDF, m_JointPDFDerivatives, and m_Alpha. The JointPDF and Alpha and its derivatives are related as follows: p = m_Alpha * m_JointPDF dp/dmu = m_Alpha * m_JointPDFDerivatives So, the JointPDF is more like a histogram than a true pdf... The histograms are left unnormalized since it may be faster to not do this explicitly.

◆ ComputePDFsSingleThreaded()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputePDFsSingleThreaded ( const ParametersType & parameters ) const

protectedvirtual

Compute PDFs; Loops over the fixed image samples and constructs the m_JointPDF and m_Alpha The JointPDF and Alpha are related as follows: p = m_Alpha * m_JointPDF So, the JointPDF is more like a histogram than a true pdf... The histogram is left unnormalised since it may be faster to not do this explicitly.

◆ ComputePDFsThreaderCallback()

template<class TFixedImage , class TMovingImage >

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputePDFsThreaderCallback ( void * arg )

staticprotected

Helper function to launch the threads.

◆ EvaluateParzenValues()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::EvaluateParzenValues	(	double	parzenWindowTerm,
		OffsetValueType	parzenWindowIndex,
		const KernelFunctionType *	kernel,
		ParzenValueContainerType &	parzenValues
	)		const

protected

Compute the Parzen values given an image value and a starting histogram index Compute the values at (parzenWindowIndex - parzenWindowTerm + k) for k = 0 ... kernelsize-1 Returns the values in a ParzenValueContainer, which is supposed to have the right size already.

◆ GetClassName()

template<class TFixedImage , class TMovingImage >

virtual const char * itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::AdvancedMattesMutualInformationMetric< TElastix >, itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >, elastix::NormalizedMutualInformationMetric< TElastix >, itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

◆ GetDerivative()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative	(	const ParametersType &	parameters,
		DerivativeType &	Derivative
	)		const

override

Get the derivatives of the match measure. This method simply calls the the GetValueAndDerivative, since this will be mostly almost as fast as just computing the derivative.

◆ GetFiniteDifferencePerturbation()

template<class TFixedImage , class TMovingImage >

virtual double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetFiniteDifferencePerturbation ( ) const

virtual

◆ GetFixedKernelBSplineOrder()

template<class TFixedImage , class TMovingImage >

virtual unsigned int itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetFixedKernelBSplineOrder ( ) const

virtual

◆ GetMovingKernelBSplineOrder()

template<class TFixedImage , class TMovingImage >

virtual unsigned int itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetMovingKernelBSplineOrder ( ) const

virtual

◆ GetNumberOfFixedHistogramBins()

template<class TFixedImage , class TMovingImage >

virtual unsigned long itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfFixedHistogramBins ( )

virtual

◆ GetNumberOfMovingHistogramBins()

template<class TFixedImage , class TMovingImage >

virtual unsigned long itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfMovingHistogramBins ( )

virtual

◆ GetUseDerivative()

template<class TFixedImage , class TMovingImage >

virtual bool itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUseDerivative ( ) const

virtual

◆ GetUseExplicitPDFDerivatives()

template<class TFixedImage , class TMovingImage >

virtual const bool & itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUseExplicitPDFDerivatives ( )

virtual

◆ GetUseFiniteDifferenceDerivative()

template<class TFixedImage , class TMovingImage >

virtual bool itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUseFiniteDifferenceDerivative ( ) const

virtual

◆ GetValueAndAnalyticDerivative()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndAnalyticDerivative	(	const ParametersType &	,
		MeasureType &	,
		DerivativeType &
	)		const

inlineprotectedvirtual

Get the value and analytic derivatives for single valued optimizers. Called by GetValueAndDerivative if UseFiniteDifferenceDerivative == false Implement this method in subclasses.

Reimplemented in itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

Definition at line 470 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ GetValueAndDerivative()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative	(	const ParametersType &	parameters,
		MeasureType &	value,
		DerivativeType &	derivative
	)		const

override

Get the value and derivatives for single valued optimizers. This method calls this->GetValueAndAnalyticDerivative or this->GetValueAndFiniteDifferenceDerivative, depending on the bool m_UseFiniteDifferenceDerivative.

◆ GetValueAndFiniteDifferenceDerivative()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndFiniteDifferenceDerivative	(	const ParametersType &	,
		MeasureType &	,
		DerivativeType &
	)		const

inlineprotectedvirtual

Get the value and finite difference derivatives for single valued optimizers. Called by GetValueAndDerivative if UseFiniteDifferenceDerivative == true Implement this method in subclasses.

Reimplemented in itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

Definition at line 479 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ Initialize()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( void )

override

Initialize the Metric by (1) Call the superclass' implementation (2) InitializeHistograms() (3) InitializeKernels() (4) Resize AlphaDerivatives

◆ InitializeHistograms()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::InitializeHistograms ( void )

protectedvirtual

Some initialization functions, called by Initialize.

Reimplemented in itk::ParzenWindowMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.

◆ InitializeKernels()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::InitializeKernels ( void )

protectedvirtual

◆ InitializeThreadingParameters()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::InitializeThreadingParameters ( void ) const

overrideprotectedvirtual

Initialize threading related parameters.

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

◆ itkAlignedTypedef()

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::itkAlignedTypedef	(	ITK_CACHE_LINE_ALIGNMENT	,
		PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct	,
		AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct
	)

protected

◆ itkPadStruct()

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::itkPadStruct	(	ITK_CACHE_LINE_ALIGNMENT	,
		ParzenWindowHistogramGetValueAndDerivativePerThreadStruct	,
		PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct
	)

protected

◆ itkStaticConstMacro() [1/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TFixedImage , class TMovingImage >

itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

◆ LaunchComputePDFsThreaderCallback()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::LaunchComputePDFsThreaderCallback ( void ) const

protected

Helper function to launch the threads.

◆ NormalizeJointPDF()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::NormalizeJointPDF	(	JointPDFType *	pdf,
		const double &	factor
	)		const

protectedvirtual

Multiply the pdf entries by the given normalization factor.

◆ NormalizeJointPDFDerivatives()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::NormalizeJointPDFDerivatives	(	JointPDFDerivativesType *	pdf,
		const double &	factor
	)		const

protectedvirtual

Multiply the pdf derivatives entries by the given normalization factor.

◆ operator=()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::operator= ( const Self & )

private

The private copy constructor.

◆ PrintSelf()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotected

Print Self.

◆ SetFiniteDifferencePerturbation()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetFiniteDifferencePerturbation ( double _arg )

virtual

For computing the finite difference derivative, the perturbation (delta) of the transform parameters; default: 1.0. mu_right= mu + delta*e_k

◆ SetFixedKernelBSplineOrder()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetFixedKernelBSplineOrder ( unsigned int _arg )

virtual

The B-spline order of the fixed Parzen window; default: 0

◆ SetMovingKernelBSplineOrder()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetMovingKernelBSplineOrder ( unsigned int _arg )

virtual

The B-spline order of the moving B-spline order; default: 3

◆ SetNumberOfFixedHistogramBins()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfFixedHistogramBins ( unsigned long _arg )

virtual

Number of bins to use for the fixed image in the histogram. Typical value is 32. The minimum value is 4 due to the padding required by the Parzen windowing with a cubic B-spline kernel. Note that even if the metric is used on binary images, the number of bins should at least be equal to four.

◆ SetNumberOfMovingHistogramBins()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfMovingHistogramBins ( unsigned long _arg )

virtual

Number of bins to use for the moving image in the histogram. Typical value is 32. The minimum value is 4 due to the padding required by the Parzen windowing with a cubic B-spline kernel. Note that even if the metric is used on binary images, the number of bins should at least be equal to four.

◆ SetUseDerivative()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUseDerivative ( bool _arg )

virtual

Whether you plan to call the GetDerivative/GetValueAndDerivative method or not. This option should be set before calling Initialize(); Default: false.

◆ SetUseExplicitPDFDerivatives()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUseExplicitPDFDerivatives ( bool _arg )

virtual

Option to use explicit PDF derivatives, which requires a lot of memory in case of many parameters.

◆ SetUseFiniteDifferenceDerivative()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUseFiniteDifferenceDerivative ( bool _arg )

virtual

Whether you want to use a finite difference implementation of the metric's derivative. This option should be set before calling Initialize(); Default: false.

◆ ThreadedComputePDFs()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::ThreadedComputePDFs ( ThreadIdType threadId )

inlineprotected

Multi-threaded versions of the ComputePDF function.

◆ UpdateJointPDFAndDerivatives()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::UpdateJointPDFAndDerivatives	(	const RealType &	fixedImageValue,
		const RealType &	movingImageValue,
		const DerivativeType *	imageJacobian,
		const NonZeroJacobianIndicesType *	nzji,
		JointPDFType *	jointPDF
	)		const

protectedvirtual

Update the joint PDF with a pixel pair; on demand also updates the pdf derivatives (if the Jacobian pointers are nonzero).

◆ UpdateJointPDFAndIncrementalPDFs()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::UpdateJointPDFAndIncrementalPDFs	(	RealType	fixedImageValue,
		RealType	movingImageValue,
		RealType	movingMaskValue,
		const DerivativeType &	movingImageValuesRight,
		const DerivativeType &	movingImageValuesLeft,
		const DerivativeType &	movingMaskValuesRight,
		const DerivativeType &	movingMaskValuesLeft,
		const NonZeroJacobianIndicesType &	nzji
	)		const

protectedvirtual

Update the joint PDF and the incremental pdfs. The input is a pixel pair (fixed, moving, moving mask) and a set of moving image/mask values when using mu+delta*e_k, for each k that has a nonzero Jacobian. And for mu-delta*e_k of course. Also updates the PerturbedAlpha's This function is used when UseFiniteDifferenceDerivative is true.

Todo:: The IsInsideMovingMask return bools are converted to doubles (1 or 0) to simplify the computation. But this may not be necessary.

◆ UpdateJointPDFDerivatives()

template<class TFixedImage , class TMovingImage >

void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::UpdateJointPDFDerivatives	(	const JointPDFIndexType &	pdfIndex,
		double	factor,
		const DerivativeType &	imageJacobian,
		const NonZeroJacobianIndicesType &	nzji
	)		const

protected

Update the pdf derivatives adds -image_jac[mu]*factor to the bin with index [ mu, pdfIndex[0], pdfIndex[1] ] for all mu. This function should only be called from UpdateJointPDFAndDerivatives.

◆ UseExplicitPDFDerivativesOff()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::UseExplicitPDFDerivativesOff ( )

virtual

◆ UseExplicitPDFDerivativesOn()

template<class TFixedImage , class TMovingImage >

virtual void itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::UseExplicitPDFDerivativesOn ( )

virtual

Field Documentation

◆ m_Alpha

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_Alpha

mutableprotected

Protected variables **************************** Variables for Alpha (the normalization factor of the histogram).

Definition at line 272 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_DerivativeMovingKernel

template<class TFixedImage , class TMovingImage >

KernelFunctionPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_DerivativeMovingKernel

protected

Definition at line 298 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FiniteDifferencePerturbation

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FiniteDifferencePerturbation

private

Definition at line 499 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedImageBinSize

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageBinSize

protected

Definition at line 290 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedImageMarginalPDF

template<class TFixedImage , class TMovingImage >

MarginalPDFType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageMarginalPDF

mutableprotected

Variables for the pdfs (actually: histograms).

Definition at line 277 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedImageNormalizedMin

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageNormalizedMin

protected

Definition at line 289 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedIncrementalMarginalPDFLeft

template<class TFixedImage , class TMovingImage >

IncrementalMarginalPDFPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedIncrementalMarginalPDFLeft

protected

Definition at line 285 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedIncrementalMarginalPDFRight

template<class TFixedImage , class TMovingImage >

IncrementalMarginalPDFPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedIncrementalMarginalPDFRight

protected

Definition at line 283 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedKernel

template<class TFixedImage , class TMovingImage >

KernelFunctionPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedKernel

protected

Kernels for computing Parzen histograms and derivatives.

Definition at line 296 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedKernelBSplineOrder

template<class TFixedImage , class TMovingImage >

unsigned int itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedKernelBSplineOrder

private

Definition at line 494 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_FixedParzenTermToIndexOffset

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_FixedParzenTermToIndexOffset

protected

Definition at line 292 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_IncrementalJointPDFLeft

template<class TFixedImage , class TMovingImage >

JointPDFDerivativesPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_IncrementalJointPDFLeft

protected

Definition at line 282 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_IncrementalJointPDFRight

template<class TFixedImage , class TMovingImage >

JointPDFDerivativesPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_IncrementalJointPDFRight

protected

Definition at line 281 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_JointPDF

template<class TFixedImage , class TMovingImage >

JointPDFPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_JointPDF

protected

Definition at line 279 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_JointPDFDerivatives

template<class TFixedImage , class TMovingImage >

JointPDFDerivativesPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_JointPDFDerivatives

protected

Definition at line 280 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_JointPDFWindow

template<class TFixedImage , class TMovingImage >

JointPDFRegionType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_JointPDFWindow

mutableprotected

Definition at line 287 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingImageBinSize

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageBinSize

protected

Definition at line 291 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingImageMarginalPDF

template<class TFixedImage , class TMovingImage >

MarginalPDFType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageMarginalPDF

mutableprotected

Definition at line 278 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingImageNormalizedMin

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageNormalizedMin

protected

Definition at line 288 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingIncrementalMarginalPDFLeft

template<class TFixedImage , class TMovingImage >

IncrementalMarginalPDFPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingIncrementalMarginalPDFLeft

protected

Definition at line 286 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingIncrementalMarginalPDFRight

template<class TFixedImage , class TMovingImage >

IncrementalMarginalPDFPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingIncrementalMarginalPDFRight

protected

Definition at line 284 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingKernel

template<class TFixedImage , class TMovingImage >

KernelFunctionPointer itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingKernel

protected

Definition at line 297 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingKernelBSplineOrder

template<class TFixedImage , class TMovingImage >

unsigned int itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingKernelBSplineOrder

private

Definition at line 495 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_MovingParzenTermToIndexOffset

template<class TFixedImage , class TMovingImage >

double itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_MovingParzenTermToIndexOffset

protected

Definition at line 293 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_NumberOfFixedHistogramBins

template<class TFixedImage , class TMovingImage >

unsigned long itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfFixedHistogramBins

private

Variables that can/should be accessed by their Set/Get functions.

Definition at line 492 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_NumberOfMovingHistogramBins

template<class TFixedImage , class TMovingImage >

unsigned long itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfMovingHistogramBins

private

Definition at line 493 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariables

template<class TFixedImage , class TMovingImage >

AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct* itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariables

mutableprotected

Definition at line 321 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariablesSize

template<class TFixedImage , class TMovingImage >

ThreadIdType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariablesSize

mutableprotected

Definition at line 322 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_ParzenWindowHistogramThreaderParameters

template<class TFixedImage , class TMovingImage >

ParzenWindowHistogramMultiThreaderParameterType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_ParzenWindowHistogramThreaderParameters

protected

Definition at line 310 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_PerturbedAlphaLeft

template<class TFixedImage , class TMovingImage >

DerivativeType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_PerturbedAlphaLeft

mutableprotected

Definition at line 274 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_PerturbedAlphaRight

template<class TFixedImage , class TMovingImage >

DerivativeType itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_PerturbedAlphaRight

mutableprotected

Definition at line 273 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_ThreaderJointPDFs

template<class TFixedImage , class TMovingImage >

std::vector< JointPDFPointer > itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderJointPDFs

mutableprotected

Threading related parameters.

Definition at line 301 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_UseDerivative

template<class TFixedImage , class TMovingImage >

bool itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UseDerivative

private

Definition at line 496 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_UseExplicitPDFDerivatives

template<class TFixedImage , class TMovingImage >

bool itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UseExplicitPDFDerivatives

private

Definition at line 497 of file itkParzenWindowHistogramImageToImageMetric.h.

◆ m_UseFiniteDifferenceDerivative

template<class TFixedImage , class TMovingImage >

bool itk::ParzenWindowHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UseFiniteDifferenceDerivative

private

Definition at line 498 of file itkParzenWindowHistogramImageToImageMetric.h.

Detailed Description

Data Structures

Public Types

Public Member Functions

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Member Typedef Documentation

◆ BSplineInterpolatorType

◆ CentralDifferenceGradientFilterType

◆ ConstPointer

◆ CoordinateRepresentationType

◆ DerivativeType

◆ DerivativeValueType

◆ FixedImageConstPointer

◆ FixedImageIndexType

◆ FixedImageIndexValueType

◆ FixedImageLimiterOutputType

◆ FixedImageLimiterType

◆ FixedImageMaskPointer

◆ FixedImageMaskType

◆ FixedImagePixelType

◆ FixedImagePointType

◆ FixedImageRegionType

◆ FixedImageType

◆ GradientImageFilterPointer

◆ GradientImageFilterType

◆ GradientImagePointer

◆ GradientImageType

◆ GradientPixelType

◆ ImageSampleContainerPointer

◆ ImageSampleContainerType

◆ ImageSamplerPointer

◆ ImageSamplerType

◆ IncrementalMarginalPDFIndexType

◆ IncrementalMarginalPDFPointer

◆ IncrementalMarginalPDFRegionType

◆ IncrementalMarginalPDFSizeType

◆ IncrementalMarginalPDFType

◆ InputPointType

◆ InterpolatorPointer

◆ InterpolatorType

◆ JointPDFDerivativesIndexType

◆ JointPDFDerivativesPointer

◆ JointPDFDerivativesRegionType

◆ JointPDFDerivativesSizeType

◆ JointPDFDerivativesType

◆ JointPDFIndexType

◆ JointPDFPointer

◆ JointPDFRegionType

◆ JointPDFSizeType

◆ JointPDFType

◆ KernelFunctionPointer

◆ KernelFunctionType

◆ MarginalPDFType

◆ MeasureType

◆ MovingImageConstPointer

◆ MovingImageContinuousIndexType

◆ MovingImageDerivativeScalesType

◆ MovingImageDerivativeType

◆ MovingImageIndexType

◆ MovingImageLimiterOutputType

◆ MovingImageLimiterType

◆ MovingImageMaskPointer

◆ MovingImageMaskType

◆ MovingImagePixelType

◆ MovingImagePointType

◆ MovingImageRegionType

◆ MovingImageType

◆ NonZeroJacobianIndicesType

◆ OffsetValueType

◆ OutputPointType

◆ ParametersType

◆ ParzenValueContainerType

◆ PDFDerivativeValueType

◆ PDFValueType

◆ Pointer