itk::PCAMetric2< TFixedImage, TMovingImage > Class Template Reference

#include <itkPCAMetric2.h>

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::PCAMetric2< TFixedImage, TMovingImage >

Definition at line 31 of file itkPCAMetric2.h.

Inheritance diagram for itk::PCAMetric2< TFixedImage, TMovingImage >:

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef Superclass::FixedImagePixelType	FixedImagePixelType
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef FixedImageRegionType::SizeType	FixedImageSizeType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass::ImageSamplerType	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImageRegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef PCAMetric2	Self
typedef AdvancedImageToImageMetric< TFixedImage, TMovingImage >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType
typedef BSplineOrder1TransformType::Pointer	BSplineOrder1TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType
typedef BSplineOrder2TransformType::Pointer	BSplineOrder2TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType
typedef BSplineOrder3TransformType::Pointer	BSplineOrder3TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension >	CombinationTransformType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType
typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer
typedef LimiterFunctionBase< RealType, FixedImageDimension >	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskSpatialObject2Type
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef FixedImageType::PixelType	FixedImagePixelType
typedef FixedImageType::Pointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef vnl_sparse_matrix< HessianValueType >	HessianType
typedef DerivativeType::ValueType	HessianValueType
typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer
typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType
typedef ImageSamplerType::Pointer	ImageSamplerPointer
typedef ImageSamplerBase< FixedImageType >	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType
typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType
typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer
typedef LimiterFunctionBase< RealType, MovingImageDimension >	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskSpatialObject2Type
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef MovingImageType::Pointer	MovingImagePointer
typedef MovingImageType::RegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef TransformType::ScalarType	ScalarType
typedef AdvancedImageToImageMetric	Self
typedef ImageToImageMetric< TFixedImage, TMovingImage >	Superclass
typedef itk::PlatformMultiThreader	ThreaderType
typedef ThreaderType::WorkUnitInfo	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType

Public Member Functions
virtual const char *	GetClassName () const
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SetGridSize (FixedImageSizeType _arg)
virtual void	SetNumAdditionalSamplesFixed (unsigned int _arg)
virtual void	SetReducedDimensionIndex (unsigned int _arg)
virtual void	SetSubtractMean (bool _arg)
virtual void	SetTransformIsStackTransform (bool _arg)
Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const char *	GetClassName () const
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()
virtual double	GetFixedLimitRangeRatio () const
virtual ImageSamplerType *	GetImageSampler (void) const
virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()
virtual const MovingImageLimiterType *	GetMovingImageLimiter ()
virtual double	GetMovingLimitRangeRatio () const
virtual double	GetRequiredRatioOfValidSamples () const
virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const
virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformType *	GetTransform (void) const override
virtual bool	GetUseFixedImageLimiter () const
virtual bool	GetUseImageSampler () const
virtual const bool &	GetUseMetricSingleThreaded ()
virtual bool	GetUseMovingImageDerivativeScales () const
virtual bool	GetUseMovingImageLimiter () const
virtual const bool &	GetUseMultiThread ()
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void	SetFixedLimitRangeRatio (double _arg)
virtual void	SetImageSampler (ImageSamplerType *_arg)
virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void	SetMovingLimitRangeRatio (double _arg)
virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
virtual void	SetRequiredRatioOfValidSamples (double _arg)
virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
virtual void	SetTransform (AdvancedTransformType *arg)
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	SetUseMovingImageDerivativeScales (bool _arg)
virtual void	SetUseMultiThread (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
virtual void	UseMultiThreadOff ()
virtual void	UseMultiThreadOn ()

Static Public Member Functions
static Pointer	New ()

Protected Types
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType
typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType
typedef itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension >	FixedImageContinuousIndexType
typedef Superclass::FixedImageIndexType	FixedImageIndexType
typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType
typedef Superclass::FixedImagePointType	FixedImagePointType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType
typedef Superclass::MovingImageIndexType	MovingImageIndexType
typedef Superclass::MovingImagePointType	MovingImagePointType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType
typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType
typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer
typedef GradientImageFilter< MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType
typedef FixedImageType::IndexType	FixedImageIndexType
typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType
typedef TransformType::InputPointType	FixedImagePointType
typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer
typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType
typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType
typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType
typedef MovingImageType::IndexType	MovingImageIndexType
typedef TransformType::OutputPointType	MovingImagePointType
typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer
typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType

Protected Member Functions
void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override
	PCAMetric2 ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~PCAMetric2 () override
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
	AdvancedImageToImageMetric ()
virtual void	AfterThreadedGetValue (MeasureType &value) const
virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
virtual void	CheckForAdvancedTransform (void)
virtual void	CheckForBSplineInterpolator (void)
virtual void	CheckForBSplineTransform (void) const
virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
virtual void	InitializeImageSampler (void)
virtual void	InitializeLimiters (void)
virtual void	InitializeThreadingParameters (void) const
virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)
void	LaunchGetValueAndDerivativeThreaderCallback (void) const
void	LaunchGetValueThreaderCallback (void) const
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetUseFixedImageLimiter (bool _arg)
virtual void	SetUseImageSampler (bool _arg)
virtual void	SetUseMovingImageLimiter (bool _arg)
virtual void	ThreadedGetValue (ThreadIdType threadID)
virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)
virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
	~AdvancedImageToImageMetric () override

Private Member Functions
void	operator= (const Self &)
	PCAMetric2 (const Self &)
void	SampleRandom (const int n, const int m, std::vector< int > &numbers) const

Private Attributes
FixedImageSizeType	m_GridSize
unsigned int	m_NumAdditionalSamplesFixed
unsigned int	m_ReducedDimensionIndex
bool	m_SubtractMean
bool	m_TransformIsStackTransform

Additional Inherited Members
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)
Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer	m_AdvancedTransform
BSplineInterpolatorPointer	m_BSplineInterpolator
BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat
CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter
FixedImageLimiterPointer	m_FixedImageLimiter
FixedImageLimiterOutputType	m_FixedImageMaxLimit
FixedImageLimiterOutputType	m_FixedImageMinLimit
FixedImagePixelType	m_FixedImageTrueMax
FixedImagePixelType	m_FixedImageTrueMin
double	m_FixedLimitRangeRatio
AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables
ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize
AlignedGetValuePerThreadStruct *	m_GetValuePerThreadVariables
ThreadIdType	m_GetValuePerThreadVariablesSize
ImageSamplerPointer	m_ImageSampler
bool	m_InterpolatorIsBSpline
bool	m_InterpolatorIsBSplineFloat
bool	m_InterpolatorIsLinear
bool	m_InterpolatorIsReducedBSpline
LinearInterpolatorPointer	m_LinearInterpolator
MovingImageLimiterPointer	m_MovingImageLimiter
MovingImageLimiterOutputType	m_MovingImageMaxLimit
MovingImageLimiterOutputType	m_MovingImageMinLimit
MovingImagePixelType	m_MovingImageTrueMax
MovingImagePixelType	m_MovingImageTrueMin
double	m_MovingLimitRangeRatio
ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator
MultiThreaderParameterType	m_ThreaderMetricParameters
bool	m_TransformIsAdvanced
bool	m_TransformIsBSpline
bool	m_UseMetricSingleThreaded
bool	m_UseMultiThread
bool	m_UseOpenMP

Member Typedef Documentation

BSplineInterpolatorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::BSplineInterpolatorType itk::PCAMetric2< TFixedImage, TMovingImage >::BSplineInterpolatorType

protected

Definition at line 146 of file itkPCAMetric2.h.

CentralDifferenceGradientFilterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::CentralDifferenceGradientFilterType itk::PCAMetric2< TFixedImage, TMovingImage >::CentralDifferenceGradientFilterType

protected

Definition at line 147 of file itkPCAMetric2.h.

ConstPointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< const Self > itk::PCAMetric2< TFixedImage, TMovingImage >::ConstPointer

Definition at line 41 of file itkPCAMetric2.h.

CoordinateRepresentationType

template<class TFixedImage , class TMovingImage >

typedef Superclass::CoordinateRepresentationType itk::PCAMetric2< TFixedImage, TMovingImage >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 61 of file itkPCAMetric2.h.

DerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::DerivativeType itk::PCAMetric2< TFixedImage, TMovingImage >::DerivativeType

Definition at line 86 of file itkPCAMetric2.h.

FixedImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageConstPointer itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 66 of file itkPCAMetric2.h.

FixedImageContinuousIndexType

template<class TFixedImage , class TMovingImage >

typedef itk::ContinuousIndex< CoordinateRepresentationType, FixedImageDimension > itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageContinuousIndexType

protected

Definition at line 143 of file itkPCAMetric2.h.

FixedImageIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageIndexType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageIndexType

protected

Protected Typedefs Typedefs inherited from superclass

Definition at line 138 of file itkPCAMetric2.h.

FixedImageIndexValueType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageIndexValueType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageIndexValueType

protected

Definition at line 139 of file itkPCAMetric2.h.

FixedImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterOutputType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageLimiterOutputType

Definition at line 98 of file itkPCAMetric2.h.

FixedImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageLimiterType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageLimiterType

Definition at line 95 of file itkPCAMetric2.h.

FixedImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskPointer itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageMaskPointer

Definition at line 82 of file itkPCAMetric2.h.

FixedImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageMaskType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageMaskType

Definition at line 81 of file itkPCAMetric2.h.

FixedImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePixelType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImagePixelType

Definition at line 88 of file itkPCAMetric2.h.

FixedImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImagePointType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImagePointType

protected

Definition at line 141 of file itkPCAMetric2.h.

FixedImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageRegionType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageRegionType

Definition at line 43 of file itkPCAMetric2.h.

FixedImageSizeType

template<class TFixedImage , class TMovingImage >

typedef FixedImageRegionType::SizeType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageSizeType

Definition at line 44 of file itkPCAMetric2.h.

FixedImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::FixedImageType itk::PCAMetric2< TFixedImage, TMovingImage >::FixedImageType

Definition at line 65 of file itkPCAMetric2.h.

GradientImageFilterPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterPointer itk::PCAMetric2< TFixedImage, TMovingImage >::GradientImageFilterPointer

Definition at line 80 of file itkPCAMetric2.h.

GradientImageFilterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageFilterType itk::PCAMetric2< TFixedImage, TMovingImage >::GradientImageFilterType

Definition at line 79 of file itkPCAMetric2.h.

GradientImagePointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImagePointer itk::PCAMetric2< TFixedImage, TMovingImage >::GradientImagePointer

Definition at line 78 of file itkPCAMetric2.h.

GradientImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientImageType itk::PCAMetric2< TFixedImage, TMovingImage >::GradientImageType

Definition at line 77 of file itkPCAMetric2.h.

GradientPixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::GradientPixelType itk::PCAMetric2< TFixedImage, TMovingImage >::GradientPixelType

Definition at line 76 of file itkPCAMetric2.h.

ImageSampleContainerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerPointer itk::PCAMetric2< TFixedImage, TMovingImage >::ImageSampleContainerPointer

Definition at line 94 of file itkPCAMetric2.h.

ImageSampleContainerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSampleContainerType itk::PCAMetric2< TFixedImage, TMovingImage >::ImageSampleContainerType

Definition at line 92 of file itkPCAMetric2.h.

ImageSamplerPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerPointer itk::PCAMetric2< TFixedImage, TMovingImage >::ImageSamplerPointer

Definition at line 91 of file itkPCAMetric2.h.

ImageSamplerType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ImageSamplerType itk::PCAMetric2< TFixedImage, TMovingImage >::ImageSamplerType

Definition at line 90 of file itkPCAMetric2.h.

InputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InputPointType itk::PCAMetric2< TFixedImage, TMovingImage >::InputPointType

Definition at line 69 of file itkPCAMetric2.h.

InterpolatorPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorPointer itk::PCAMetric2< TFixedImage, TMovingImage >::InterpolatorPointer

Definition at line 74 of file itkPCAMetric2.h.

InterpolatorType

template<class TFixedImage , class TMovingImage >

typedef Superclass::InterpolatorType itk::PCAMetric2< TFixedImage, TMovingImage >::InterpolatorType

Definition at line 73 of file itkPCAMetric2.h.

MeasureType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MeasureType itk::PCAMetric2< TFixedImage, TMovingImage >::MeasureType

Definition at line 85 of file itkPCAMetric2.h.

MovingImageConstPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageConstPointer itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 64 of file itkPCAMetric2.h.

MovingImageContinuousIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageContinuousIndexType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageContinuousIndexType

protected

Definition at line 145 of file itkPCAMetric2.h.

MovingImageDerivativeScalesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageDerivativeScalesType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageDerivativeScalesType

Definition at line 102 of file itkPCAMetric2.h.

MovingImageDerivativeType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageDerivativeType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageDerivativeType

protected

Definition at line 148 of file itkPCAMetric2.h.

MovingImageIndexType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageIndexType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageIndexType

protected

Definition at line 140 of file itkPCAMetric2.h.

MovingImageLimiterOutputType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterOutputType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageLimiterOutputType

Definition at line 100 of file itkPCAMetric2.h.

MovingImageLimiterType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageLimiterType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageLimiterType

Definition at line 96 of file itkPCAMetric2.h.

MovingImageMaskPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskPointer itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageMaskPointer

Definition at line 84 of file itkPCAMetric2.h.

MovingImageMaskType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageMaskType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageMaskType

Definition at line 83 of file itkPCAMetric2.h.

MovingImagePixelType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePixelType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImagePixelType

Definition at line 63 of file itkPCAMetric2.h.

MovingImagePointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImagePointType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImagePointType

protected

Definition at line 144 of file itkPCAMetric2.h.

MovingImageRegionType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageRegionType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageRegionType

Definition at line 89 of file itkPCAMetric2.h.

MovingImageType

template<class TFixedImage , class TMovingImage >

typedef Superclass::MovingImageType itk::PCAMetric2< TFixedImage, TMovingImage >::MovingImageType

Definition at line 62 of file itkPCAMetric2.h.

NonZeroJacobianIndicesType

template<class TFixedImage , class TMovingImage >

typedef Superclass::NonZeroJacobianIndicesType itk::PCAMetric2< TFixedImage, TMovingImage >::NonZeroJacobianIndicesType

protected

Definition at line 149 of file itkPCAMetric2.h.

OutputPointType

template<class TFixedImage , class TMovingImage >

typedef Superclass::OutputPointType itk::PCAMetric2< TFixedImage, TMovingImage >::OutputPointType

Definition at line 70 of file itkPCAMetric2.h.

ParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersType itk::PCAMetric2< TFixedImage, TMovingImage >::ParametersType

Definition at line 87 of file itkPCAMetric2.h.

Pointer

template<class TFixedImage , class TMovingImage >

typedef SmartPointer< Self > itk::PCAMetric2< TFixedImage, TMovingImage >::Pointer

Definition at line 40 of file itkPCAMetric2.h.

RealType

template<class TFixedImage , class TMovingImage >

typedef Superclass::RealType itk::PCAMetric2< TFixedImage, TMovingImage >::RealType

Definition at line 75 of file itkPCAMetric2.h.

Self

template<class TFixedImage , class TMovingImage >

typedef PCAMetric2 itk::PCAMetric2< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 37 of file itkPCAMetric2.h.

Superclass

template<class TFixedImage , class TMovingImage >

typedef AdvancedImageToImageMetric< TFixedImage, TMovingImage > itk::PCAMetric2< TFixedImage, TMovingImage >::Superclass

Definition at line 39 of file itkPCAMetric2.h.

TransformJacobianType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformJacobianType itk::PCAMetric2< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 72 of file itkPCAMetric2.h.

TransformParametersType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformParametersType itk::PCAMetric2< TFixedImage, TMovingImage >::TransformParametersType

Definition at line 71 of file itkPCAMetric2.h.

TransformPointer

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformPointer itk::PCAMetric2< TFixedImage, TMovingImage >::TransformPointer

Definition at line 68 of file itkPCAMetric2.h.

TransformType

template<class TFixedImage , class TMovingImage >

typedef Superclass::TransformType itk::PCAMetric2< TFixedImage, TMovingImage >::TransformType

Definition at line 67 of file itkPCAMetric2.h.

Constructor & Destructor Documentation

PCAMetric2() [1/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric2< TFixedImage, TMovingImage >::PCAMetric2 ( )

protected

~PCAMetric2()

template<class TFixedImage , class TMovingImage >

itk::PCAMetric2< TFixedImage, TMovingImage >::~PCAMetric2 ( )

inlineoverrideprotected

Definition at line 132 of file itkPCAMetric2.h.

PCAMetric2() [2/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric2< TFixedImage, TMovingImage >::PCAMetric2 ( const Self &  )

private

Member Function Documentation

EvaluateTransformJacobianInnerProduct()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric2< TFixedImage, TMovingImage >::EvaluateTransformJacobianInnerProduct ( const TransformJacobianType &  jacobian, const MovingImageDerivativeType &  movingImageDerivative, DerivativeType &  imageJacobian  ) const

overrideprotectedvirtual

Computes the innerproduct of transform Jacobian with moving image gradient. The results are stored in imageJacobian, which is supposed to have the right size (same length as Jacobian's number of columns).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

GetClassName()

template<class TFixedImage , class TMovingImage >

virtual const char * itk::PCAMetric2< TFixedImage, TMovingImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in elastix::PCAMetric2< TElastix >.

GetDerivative()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric2< TFixedImage, TMovingImage >::GetDerivative ( const TransformParametersType &  parameters, DerivativeType &  derivative  ) const

override

Get the derivatives of the match measure.

GetValue()

template<class TFixedImage , class TMovingImage >

MeasureType itk::PCAMetric2< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType &  parameters ) const

override

Get the value for single valued optimizers.

GetValueAndDerivative()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric2< TFixedImage, TMovingImage >::GetValueAndDerivative ( const TransformParametersType &  parameters, MeasureType &  Value, DerivativeType &  Derivative  ) const

override

Get value and derivatives for multiple valued optimizers.

Initialize()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric2< TFixedImage, TMovingImage >::Initialize ( void  )

override

Initialize the Metric by making sure that all the components are present and plugged together correctly.

• Call the superclass' implementation.

itkStaticConstMacro() [1/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric2< TFixedImage, TMovingImage >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

itkStaticConstMacro() [2/2]

template<class TFixedImage , class TMovingImage >

itk::PCAMetric2< TFixedImage, TMovingImage >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

New()

template<class TFixedImage , class TMovingImage >

static Pointer itk::PCAMetric2< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric2< TFixedImage, TMovingImage >::operator= ( const Self &  )

private

PrintSelf()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric2< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotected

SampleRandom()

template<class TFixedImage , class TMovingImage >

void itk::PCAMetric2< TFixedImage, TMovingImage >::SampleRandom ( const int  n, const int  m, std::vector< int > &  numbers  ) const

private

Sample n random numbers from 0..m and add them to the vector.

SetGridSize()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetGridSize ( FixedImageSizeType  _arg )

virtual

SetNumAdditionalSamplesFixed()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetNumAdditionalSamplesFixed ( unsigned int  _arg )

virtual

Set functions.

SetReducedDimensionIndex()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetReducedDimensionIndex ( unsigned int  _arg )

virtual

SetSubtractMean()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetSubtractMean ( bool  _arg )

virtual

SetTransformIsStackTransform()

template<class TFixedImage , class TMovingImage >

virtual void itk::PCAMetric2< TFixedImage, TMovingImage >::SetTransformIsStackTransform ( bool  _arg )

virtual

Field Documentation

m_GridSize

template<class TFixedImage , class TMovingImage >

FixedImageSizeType itk::PCAMetric2< TFixedImage, TMovingImage >::m_GridSize

private

GridSize of B-spline transform.

Definition at line 176 of file itkPCAMetric2.h.

m_NumAdditionalSamplesFixed

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric2< TFixedImage, TMovingImage >::m_NumAdditionalSamplesFixed

private

Variables to control random sampling in last dimension.

Definition at line 169 of file itkPCAMetric2.h.

m_ReducedDimensionIndex

template<class TFixedImage , class TMovingImage >

unsigned int itk::PCAMetric2< TFixedImage, TMovingImage >::m_ReducedDimensionIndex

private

Definition at line 170 of file itkPCAMetric2.h.

m_SubtractMean

template<class TFixedImage , class TMovingImage >

bool itk::PCAMetric2< TFixedImage, TMovingImage >::m_SubtractMean

private

Bool to determine if we want to subtract the mean derivate from the derivative elements.

Definition at line 173 of file itkPCAMetric2.h.

m_TransformIsStackTransform

template<class TFixedImage , class TMovingImage >

bool itk::PCAMetric2< TFixedImage, TMovingImage >::m_TransformIsStackTransform

private

Bool to indicate if the transform used is a stacktransform. Set by elx files.

Definition at line 179 of file itkPCAMetric2.h.