#include <itkGPUAdvancedBSplineDeformableTransform.h>

Detailed Description

template<typename TScalarType = float, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3, typename TParentTransform = AdvancedBSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >>
class itk::GPUAdvancedBSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder, TParentTransform >

GPU version of AdvancedBSplineDeformableTransform.

Author: Denis P. Shamonin and Marius Staring. Division of Image Processing, Department of Radiology, Leiden, The Netherlands

Note: This work was funded by the Netherlands Organisation for Scientific Research (NWO NRG-2010.02 and NWO 639.021.124).

Definition at line 39 of file itkGPUAdvancedBSplineDeformableTransform.h.

Inheritance diagram for itk::GPUAdvancedBSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder, TParentTransform >:

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef TParentTransform	CPUSuperclass

typedef GPUBSplineBaseTransform< TScalarType, NDimensions >	GPUSuperclass

typedef CPUSuperclass::ImagePointer	ImagePointer

typedef CPUSuperclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef GPUAdvancedBSplineDeformableTransform	Self

Public Types inherited from itk::AdvancedBSplineDeformableTransform< float, 3, 3 >
typedef SmartPointer< const Self >	ConstPointer

typedef WeightsFunctionType::ContinuousIndexType	ContinuousIndexType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeWeightsFunctionType::Pointer	DerivativeWeightsFunctionPointer

typedef BSplineInterpolationDerivativeWeightFunction< ScalarType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SplineOrder) >	DerivativeWeightsFunctionType

typedef Superclass::DirectionType	DirectionType

typedef Superclass::GridOffsetType	GridOffsetType

typedef Superclass::ImagePointer	ImagePointer

typedef Superclass::ImageType	ImageType

typedef Superclass::IndexType	IndexType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef Superclass::InternalMatrixType	InternalMatrixType

typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType

typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef Superclass::MovingImageGradientType	MovingImageGradientType

typedef Superclass::MovingImageGradientValueType	MovingImageGradientValueType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OriginType	OriginType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParameterIndexArrayType	ParameterIndexArrayType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RegionType	RegionType

typedef Superclass::ScalarType	ScalarType

typedef AdvancedBSplineDeformableTransform	Self

typedef Superclass::SizeType	SizeType

typedef SODerivativeWeightsFunctionType::Pointer	SODerivativeWeightsFunctionPointer

typedef BSplineInterpolationSecondOrderDerivativeWeightFunction< ScalarType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SplineOrder) >	SODerivativeWeightsFunctionType

typedef Superclass::SpacingType	SpacingType

typedef Superclass::SpatialHessianType	SpatialHessianType

typedef Superclass::SpatialJacobianType	SpatialJacobianType

typedef AdvancedBSplineDeformableTransformBase< float, NDimensions >	Superclass

typedef WeightsFunctionType::Pointer	WeightsFunctionPointer

typedef BSplineInterpolationWeightFunction2< ScalarType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SplineOrder) >	WeightsFunctionType

typedef WeightsFunctionType::WeightsType	WeightsType

Public Types inherited from itk::AdvancedBSplineDeformableTransformBase< float, NDimensions >
typedef SmartPointer< const Self >	ConstPointer

typedef ContinuousIndex< ScalarType, SpaceDimension >	ContinuousIndexType

typedef Superclass::DerivativeType	DerivativeType

typedef ImageType::DirectionType	DirectionType

typedef Superclass::FixedParametersType	FixedParametersType

typedef IndexType	GridOffsetType

typedef ImageType::Pointer	ImagePointer

typedef Image< PixelType, itkGetStaticConstMacro(SpaceDimension) >	ImageType

typedef RegionType::IndexType	IndexType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef Superclass::InternalMatrixType	InternalMatrixType

typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType

typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef Superclass::MovingImageGradientType	MovingImageGradientType

typedef Superclass::MovingImageGradientValueType	MovingImageGradientValueType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef ImageType::PointType	OriginType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Array< unsigned long >	ParameterIndexArrayType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef ImageRegion< itkGetStaticConstMacro(SpaceDimension) >	RegionType

typedef Superclass::ScalarType	ScalarType

typedef AdvancedBSplineDeformableTransformBase	Self

typedef RegionType::SizeType	SizeType

typedef ImageType::SpacingType	SpacingType

typedef Superclass::SpatialHessianType	SpatialHessianType

typedef Superclass::SpatialJacobianType	SpatialJacobianType

typedef AdvancedTransform< float, NDimensions, NDimensions >	Superclass

typedef Superclass::TransformCategoryEnum	TransformCategoryEnum

Public Types inherited from itk::AdvancedTransform< float, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::FixedParametersType	FixedParametersType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef SpatialJacobianType::InternalMatrixType	InternalMatrixType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::InverseTransformBaseType	InverseTransformBaseType

typedef std::vector< SpatialHessianType >	JacobianOfSpatialHessianType

typedef std::vector< SpatialJacobianType >	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef OutputCovariantVectorType	MovingImageGradientType

typedef MovingImageGradientType::ValueType	MovingImageGradientValueType

typedef std::vector< unsigned long >	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::ScalarType	ScalarType

typedef AdvancedTransform	Self

typedef FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >	SpatialHessianType

typedef Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >	SpatialJacobianType

typedef Transform< float, NInputDimensions, NOutputDimensions >	Superclass

typedef Transform< float, NInputDimensions, NOutputDimensions >	TransformType

typedef TransformType::ConstPointer	TransformTypeConstPointer

typedef TransformType::Pointer	TransformTypePointer

Public Types inherited from itk::GPUBSplineBaseTransform< float, 3 >
typedef FixedArray< GPUCoefficientImagePointer, NDimensions >	GPUCoefficientImageArray

typedef FixedArray< GPUDataManagerPointer, NDimensions >	GPUCoefficientImageBaseArray

typedef GPUCoefficientImageType::Pointer	GPUCoefficientImagePointer

typedef GPUImage< float, NDimensions >	GPUCoefficientImageType

typedef GPUDataManager::Pointer	GPUDataManagerPointer

typedef GPUBSplineBaseTransform	Self

Public Types inherited from itk::GPUTransformBase
typedef GPUTransformBase	Self

Public Member Functions
virtual const char *	GetClassName () const

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

void	SetCoefficientImages (ImagePointer images[])

void	SetParameters (const ParametersType &parameters)

Public Member Functions inherited from itk::AdvancedBSplineDeformableTransform< float, 3, 3 >
void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

virtual const char *	GetClassName () const

void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nzji) const override

void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

unsigned int	GetNumberOfAffectedWeights (void) const override

NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const override

unsigned long	GetNumberOfWeights (void) const

void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const override

void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const override

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

	itkStaticConstMacro (SplineOrder, unsigned int, VSplineOrder)

void	SetGridRegion (const RegionType &region) override

virtual void	TransformPoint (const InputPointType &inputPoint, OutputPointType &outputPoint, WeightsType &weights, ParameterIndexArrayType &indices, bool &inside) const

OutputPointType	TransformPoint (const InputPointType &point) const override

Public Member Functions inherited from itk::AdvancedBSplineDeformableTransformBase< float, NDimensions >
virtual const char *	GetClassName () const

virtual const ImagePointer *	GetCoefficientImages (void) const

const FixedParametersType &	GetFixedParameters (void) const override

virtual DirectionType	GetGridDirection () const

virtual OriginType	GetGridOrigin () const

virtual RegionType	GetGridRegion () const

virtual SpacingType	GetGridSpacing () const

virtual unsigned int	GetNumberOfAffectedWeights (void) const=0

NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const override=0

NumberOfParametersType	GetNumberOfParameters (void) const override

virtual NumberOfParametersType	GetNumberOfParametersPerDimension (void) const

const ParametersType &	GetParameters (void) const override

TransformCategoryEnum	GetTransformCategory (void) const override

virtual const RegionType &	GetValidRegion ()

bool	IsLinear (void) const override

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

virtual void	SetCoefficientImages (ImagePointer images[])

void	SetFixedParameters (const FixedParametersType &parameters) override

virtual void	SetGridDirection (const DirectionType &direction)

virtual void	SetGridOrigin (const OriginType &origin)

virtual void	SetGridRegion (const RegionType &region)=0

virtual void	SetGridSpacing (const SpacingType &spacing)

void	SetIdentity (void)

void	SetParameters (const ParametersType &parameters) override

void	SetParametersByValue (const ParametersType &parameters) override

OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override

OutputVectorType	TransformVector (const InputVectorType &) const override

OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override

Public Member Functions inherited from itk::AdvancedTransform< float, NDimensions, NDimensions >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override

virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual const char *	GetClassName () const

virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const

virtual bool	GetHasNonZeroSpatialHessian () const

virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const

virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const=0

virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const=0

	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)

	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Public Member Functions inherited from itk::GPUBSplineBaseTransform< float, 3 >
virtual const char *	GetClassName () const

const GPUCoefficientImageArray	GetGPUCoefficientImages (void) const

const GPUCoefficientImageBaseArray	GetGPUCoefficientImagesBases (void) const

virtual unsigned int	GetSplineOrder () const

bool	IsBSplineTransform (void) const override

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

Public Member Functions inherited from itk::GPUTransformBase
virtual const char *	GetNameOfClass () const

virtual GPUDataManager::Pointer	GetParametersDataManager (const std::vcl_size_t index) const

virtual GPUDataManager::Pointer	GetParametersDataManager (void) const

virtual bool	GetSourceCode (std::string &source) const

virtual bool	IsBSplineTransform (void) const

virtual bool	IsIdentityTransform (void) const

virtual bool	IsMatrixOffsetTransform (void) const

virtual bool	IsTranslationTransform (void) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::AdvancedBSplineDeformableTransform< float, 3, 3 >
static Pointer	New ()

Protected Member Functions
void	CopyCoefficientImagesToGPU (void)

	GPUAdvancedBSplineDeformableTransform ()

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual	~GPUAdvancedBSplineDeformableTransform ()

Protected Member Functions inherited from itk::AdvancedBSplineDeformableTransform< float, 3, 3 >
	AdvancedBSplineDeformableTransform ()

void	ComputeNonZeroJacobianIndices (NonZeroJacobianIndicesType &nonZeroJacobianIndices, const RegionType &supportRegion) const override

	itkGetModifiableObjectMacro (WeightsFunction, WeightsFunctionType)

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	SetWeightsFunction (WeightsFunctionType *_arg)

void	WrapAsImages (void)

	~AdvancedBSplineDeformableTransform () override

Protected Member Functions inherited from itk::AdvancedBSplineDeformableTransformBase< float, NDimensions >
	AdvancedBSplineDeformableTransformBase ()

virtual void	ComputeNonZeroJacobianIndices (NonZeroJacobianIndicesType &nonZeroJacobianIndices, const RegionType &supportRegion) const=0

virtual bool	InsideValidRegion (const ContinuousIndexType &index) const

void	PrintSelf (std::ostream &os, Indent indent) const override

void	TransformPointToContinuousGridIndex (const InputPointType &point, ContinuousIndexType &index) const

void	UpdateGridOffsetTable (void)

void	UpdatePointIndexConversions (void)

void	WrapAsImages (void)

	~AdvancedBSplineDeformableTransformBase () override

Protected Member Functions inherited from itk::AdvancedTransform< float, NDimensions, NDimensions >
	AdvancedTransform ()

	AdvancedTransform (NumberOfParametersType numberOfParameters)

	~AdvancedTransform () override

Protected Member Functions inherited from itk::GPUBSplineBaseTransform< float, 3 >
bool	GetSourceCode (std::string &source) const override

	GPUBSplineBaseTransform ()

virtual void	SetSplineOrder (const unsigned int splineOrder)

	~GPUBSplineBaseTransform () override

Protected Member Functions inherited from itk::GPUTransformBase
	GPUTransformBase ()

virtual	~GPUTransformBase ()

Private Member Functions
	GPUAdvancedBSplineDeformableTransform (const Self &other)

const Self &	operator= (const Self &)

Additional Inherited Members
Protected Types inherited from itk::AdvancedBSplineDeformableTransform< float, 3, 3 >
typedef Superclass::JacobianImageType	JacobianImageType

typedef Superclass::JacobianPixelType	JacobianPixelType

Protected Types inherited from itk::AdvancedBSplineDeformableTransformBase< float, NDimensions >
typedef Image< JacobianPixelType, itkGetStaticConstMacro(SpaceDimension) >	JacobianImageType

typedef JacobianType::ValueType	JacobianPixelType

Protected Attributes inherited from itk::AdvancedBSplineDeformableTransform< float, 3, 3 >
std::vector< DerivativeWeightsFunctionPointer >	m_DerivativeWeightsFunctions

std::vector< std::vector< SODerivativeWeightsFunctionPointer > >	m_SODerivativeWeightsFunctions

WeightsFunctionPointer	m_WeightsFunction

Protected Attributes inherited from itk::AdvancedBSplineDeformableTransformBase< float, NDimensions >
ImagePointer	m_CoefficientImages [NDimensions]

DirectionType	m_GridDirection

GridOffsetType	m_GridOffsetTable

OriginType	m_GridOrigin

RegionType	m_GridRegion

SpacingType	m_GridSpacing

DirectionType	m_IndexToPoint

const ParametersType *	m_InputParametersPointer

ParametersType	m_InternalParametersBuffer

JacobianImageType::Pointer	m_JacobianImage [NDimensions]

IndexType	m_LastJacobianIndex

unsigned long	m_Offset

DirectionType	m_PointToIndexMatrix

SpatialJacobianType	m_PointToIndexMatrix2

FixedArray< ScalarType, NDimensions >	m_PointToIndexMatrixDiagonal

FixedArray< ScalarType, NDimensions *NDimensions >	m_PointToIndexMatrixDiagonalProducts

bool	m_PointToIndexMatrixIsDiagonal

DirectionType	m_PointToIndexMatrixTransposed

SpatialJacobianType	m_PointToIndexMatrixTransposed2

bool	m_SplineOrderOdd

SizeType	m_SupportSize

RegionType	m_ValidRegion

ContinuousIndexType	m_ValidRegionBegin

ContinuousIndexType	m_ValidRegionEnd

ImagePointer	m_WrappedImage [NDimensions]

Protected Attributes inherited from itk::AdvancedTransform< float, NDimensions, NDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian

bool	m_HasNonZeroSpatialHessian

Protected Attributes inherited from itk::GPUBSplineBaseTransform< float, 3 >
GPUCoefficientImageArray	m_GPUBSplineTransformCoefficientImages

GPUCoefficientImageBaseArray	m_GPUBSplineTransformCoefficientImagesBase

Protected Attributes inherited from itk::GPUTransformBase
GPUDataManager::Pointer	m_ParametersDataManager