#include <elxTransformixMain.h>

Detailed Description

A class with all functionality to configure transformix.

The TransformixMain class inherits from ElastixMain. We overwrite the Run() -function. In the new Run() the Run()-function from the ElastixTemplate-class is not called (as in elxElastixMain.cxx), because this time we don't want to start a registration, but just apply a transformation to an input image.

Definition at line 38 of file elxTransformixMain.h.

Inheritance diagram for elastix::TransformixMain:

Public Types
typedef Superclass::ArgumentMapType	ArgumentMapType

typedef Superclass::ComponentDatabasePointer	ComponentDatabasePointer

typedef Superclass::ComponentDatabaseType	ComponentDatabaseType

typedef Superclass::ComponentDescriptionType	ComponentDescriptionType

typedef Superclass::ComponentLoaderPointer	ComponentLoaderPointer

typedef Superclass::ComponentLoaderType	ComponentLoaderType

typedef Superclass::ConfigurationPointer	ConfigurationPointer

typedef Superclass::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectContainerPointer	DataObjectContainerPointer

typedef Superclass::DataObjectContainerType	DataObjectContainerType

typedef Superclass::DataObjectPointer	DataObjectPointer

typedef Superclass::DataObjectType	DataObjectType

typedef Superclass::DBIndexType	DBIndexType

typedef Superclass::ElastixBaseType	ElastixBaseType

typedef Superclass::ImageDimensionType	ImageDimensionType

typedef Superclass::ObjectContainerPointer	ObjectContainerPointer

typedef Superclass::ObjectContainerType	ObjectContainerType

typedef Superclass::ObjectPointer	ObjectPointer

typedef Superclass::ObjectType	ObjectType

typedef Superclass::ParameterMapType	ParameterMapType

typedef Superclass::PixelTypeDescriptionType	PixelTypeDescriptionType

typedef itk::SmartPointer< Self >	Pointer

typedef Superclass::PtrToCreator	PtrToCreator

typedef TransformixMain	Self

typedef ElastixMain	Superclass

Public Types inherited from elastix::ElastixMain
typedef ConfigurationType::CommandLineArgumentMapType	ArgumentMapType

typedef ComponentDatabaseType::Pointer	ComponentDatabasePointer

typedef ComponentDatabase	ComponentDatabaseType

typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType

typedef ComponentLoaderType::Pointer	ComponentLoaderPointer

typedef ComponentLoader	ComponentLoaderType

typedef ConfigurationType::Pointer	ConfigurationPointer

typedef ElastixBase::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef ElastixBase::DataObjectContainerPointer	DataObjectContainerPointer

typedef ElastixBase::DataObjectContainerType	DataObjectContainerType

typedef DataObjectType::Pointer	DataObjectPointer

typedef itk::DataObject	DataObjectType

typedef ComponentDatabaseType::IndexType	DBIndexType

typedef ElastixBase	ElastixBaseType

typedef ElastixBase::FlatDirectionCosinesType	FlatDirectionCosinesType

typedef ComponentDatabaseType::ImageDimensionType	ImageDimensionType

typedef ElastixBase::ObjectContainerPointer	ObjectContainerPointer

typedef ElastixBase::ObjectContainerType	ObjectContainerType

typedef ObjectType::Pointer	ObjectPointer

typedef itk::Object	ObjectType

typedef itk::ParameterMapInterface::ParameterMapType	ParameterMapType

typedef ComponentDatabaseType::PixelTypeDescriptionType	PixelTypeDescriptionType

typedef itk::SmartPointer< Self >	Pointer

typedef ComponentDatabaseType::PtrToCreator	PtrToCreator

typedef ElastixMain	Self

typedef itk::Object	Superclass

Public Member Functions
virtual const char *	GetClassName () const

int	Run (const ArgumentMapType &argmap) override

int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap) override

virtual int	Run (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps)

int	Run (void) override

virtual void	SetInputImageContainer (DataObjectContainerType *inputImageContainer)

Public Member Functions inherited from elastix::ElastixMain
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap)

virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const ParameterMapType &inputMap)

virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps)

virtual const char *	GetClassName () const

virtual DBIndexType	GetDBIndex () const

virtual ElastixBaseType *	GetElastixBase (void) const

unsigned int	GetElastixLevel (void)

virtual ImageDimensionType	GetFixedImageDimension ()

virtual PixelTypeDescriptionType	GetFixedImagePixelType ()

virtual ImageDimensionType	GetMovingImageDimension ()

virtual PixelTypeDescriptionType	GetMovingImagePixelType ()

virtual const FlatDirectionCosinesType &	GetOriginalFixedImageDirectionFlat (void) const

unsigned int	GetTotalNumberOfElastixLevels (void)

virtual ParameterMapType	GetTransformParametersMap (void) const

	itkGetModifiableObjectMacro (Configuration, ConfigurationType)

	itkGetModifiableObjectMacro (Elastix, ObjectType)

	itkGetModifiableObjectMacro (FinalTransform, ObjectType)

	itkGetModifiableObjectMacro (FixedImageContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (FixedMaskContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (InitialTransform, ObjectType)

	itkGetModifiableObjectMacro (MovingImageContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (MovingMaskContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (ResultDeformationFieldContainer, DataObjectContainerType)

	itkGetModifiableObjectMacro (ResultImageContainer, DataObjectContainerType)

virtual int	Run (const ArgumentMapType &argmap)

virtual int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap)

virtual int	Run (void)

virtual void	SetConfiguration (ConfigurationType *_arg)

void	SetElastixLevel (unsigned int level)

virtual void	SetFixedImageContainer (DataObjectContainerType *_arg)

virtual void	SetFixedImageDimension (ImageDimensionType _arg)

virtual void	SetFixedImagePixelType (PixelTypeDescriptionType _arg)

virtual void	SetFixedMaskContainer (DataObjectContainerType *_arg)

virtual void	SetInitialTransform (ObjectType *_arg)

virtual void	SetMaximumNumberOfThreads (void) const

virtual void	SetMovingImageContainer (DataObjectContainerType *_arg)

virtual void	SetMovingImageDimension (ImageDimensionType _arg)

virtual void	SetMovingImagePixelType (PixelTypeDescriptionType _arg)

virtual void	SetMovingMaskContainer (DataObjectContainerType *_arg)

virtual void	SetOriginalFixedImageDirectionFlat (const FlatDirectionCosinesType &arg)

virtual void	SetProcessPriority (void) const

virtual void	SetResultDeformationFieldContainer (DataObjectContainerType *_arg)

virtual void	SetResultImageContainer (DataObjectContainerType *_arg)

void	SetTotalNumberOfElastixLevels (unsigned int levels)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from elastix::ElastixMain
static ComponentDatabase *	GetComponentDatabase (void)

static Pointer	New ()

static void	SetComponentDatabase (ComponentDatabase *arg)

static void	UnloadComponents (void)

Protected Member Functions
int	InitDBIndex (void) override

	TransformixMain ()

	~TransformixMain () override

Protected Member Functions inherited from elastix::ElastixMain
virtual ObjectPointer	CreateComponent (const ComponentDescriptionType &name)

virtual ObjectContainerPointer	CreateComponents (const ComponentDescriptionType &key, const ComponentDescriptionType &defaultComponentName, int &errorcode, bool mandatoryComponent=true)

	ElastixMain ()

void	GetImageInformationFromFile (const std::string &filename, ImageDimensionType &imageDimension) const

virtual int	InitDBIndex (void)

virtual int	LoadComponents (void)

	~ElastixMain () override

Private Member Functions
void	operator= (const Self &)

	TransformixMain (const Self &)

Additional Inherited Members
Protected Attributes inherited from elastix::ElastixMain
ConfigurationPointer	m_Configuration

std::vector< ConfigurationPointer >	m_Configurations

DBIndexType	m_DBIndex

ObjectPointer	m_Elastix

ObjectPointer	m_FinalTransform

DataObjectContainerPointer	m_FixedImageContainer

ImageDimensionType	m_FixedImageDimension

PixelTypeDescriptionType	m_FixedImagePixelType

DataObjectContainerPointer	m_FixedMaskContainer

ObjectPointer	m_InitialTransform

DataObjectContainerPointer	m_MovingImageContainer

ImageDimensionType	m_MovingImageDimension

PixelTypeDescriptionType	m_MovingImagePixelType

DataObjectContainerPointer	m_MovingMaskContainer

FlatDirectionCosinesType	m_OriginalFixedImageDirection

DataObjectContainerPointer	m_ResultDeformationFieldContainer

DataObjectContainerPointer	m_ResultImageContainer

ParameterMapType	m_TransformParametersMap

Static Protected Attributes inherited from elastix::ElastixMain
static ComponentDatabasePointer	s_CDB

static ComponentLoaderPointer	s_ComponentLoader