elastix::ReducedDimensionBSplineResampleInterpolator< TElastix > Class Template Reference

#include <elxRDBSplineResampleInterpolator.h>

Detailed Description

template<class TElastix>
class elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >

A resample-interpolator based on B-splines which ignores the last dimension.

The parameters used in this class are:

Parameters:

ResampleInterpolator: Select this resample interpolator as follows:
(ResampleInterpolator "FinalReducedDimensionBSplineInterpolator")

FinalReducedDimensionBSplineInterpolationOrder: the order of the B-spline used to resample the deformed moving image; possible values: (0-5)
example: (FinalReducedDimensionBSplineInterpolationOrder 3)
Default: 3.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:

FinalReducedDimensionBSplineInterpolationOrder: the order of the B-spline used to resample the deformed moving image; possible values: (0-5)
example: (FinalReducedDimensionBSplineInterpolationOrder 3)
Default: 3.

If you are in memory problems, you may use the LinearResampleInterpolator, or the NearestNeighborResampleInterpolator. Note that the former will also interpolate in the last dimension.

See also

ReducedDimensionBSplineResampleInterpolatorFloat

Definition at line 54 of file elxRDBSplineResampleInterpolator.h.

Inheritance diagram for elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >:

Public Types
typedef Superclass1::CoefficientDataType	CoefficientDataType
typedef Superclass1::CoefficientFilter	CoefficientFilter
typedef Superclass1::CoefficientFilterPointer	CoefficientFilterPointer
typedef Superclass1::CoefficientImageType	CoefficientImageType
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass1::ContinuousIndexType	ContinuousIndexType
typedef Superclass1::CovariantVectorType	CovariantVectorType
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass1::IndexType	IndexType
typedef Superclass1::InputImageType	InputImageType
typedef Superclass1::Iterator	Iterator
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass1::OutputType	OutputType
typedef itk::SmartPointer< Self >	Pointer
typedef Superclass1::PointType	PointType
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef ReducedDimensionBSplineResampleInterpolator	Self
typedef itk::BSplineInterpolateImageFunction< typename ResampleInterpolatorBase< TElastix >::InputImageType, typename ResampleInterpolatorBase< TElastix >::CoordRepType, double >	Superclass1
typedef ResampleInterpolatorBase< TElastix >	Superclass2
Public Types inherited from itk::ReducedDimensionBSplineInterpolateImageFunction< ResampleInterpolatorBase< TElastix >::InputImageType, ResampleInterpolatorBase< TElastix >::CoordRepType, double >
typedef double	CoefficientDataType
typedef MultiOrderBSplineDecompositionImageFilter< ResampleInterpolatorBase< TElastix >::InputImageType, CoefficientImageType >	CoefficientFilter
typedef CoefficientFilter::Pointer	CoefficientFilterPointer
typedef Image< CoefficientDataType, itkGetStaticConstMacro(ImageDimension) >	CoefficientImageType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::ContinuousIndexType	ContinuousIndexType
typedef CovariantVector< OutputType, itkGetStaticConstMacro(ImageDimension) >	CovariantVectorType
typedef Superclass::IndexType	IndexType
typedef Superclass::InputImageType	InputImageType
typedef ImageLinearIteratorWithIndex< ResampleInterpolatorBase< TElastix >::InputImageType >	Iterator
typedef Superclass::OutputType	OutputType
typedef SmartPointer< Self >	Pointer
typedef Superclass::PointType	PointType
typedef ReducedDimensionBSplineInterpolateImageFunction	Self
using	SizeType = typename TImageType::SizeType
typedef InterpolateImageFunction< ResampleInterpolatorBase< TElastix >::InputImageType, ResampleInterpolatorBase< TElastix >::CoordRepType >	Superclass
Public Types inherited from elastix::ResampleInterpolatorBase< TElastix >
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ElastixType::CoordRepType	CoordRepType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ElastixType::MovingImageType	InputImageType
typedef itk::InterpolateImageFunction< InputImageType, CoordRepType >	ITKBaseType
typedef ElastixType::ParameterMapType	ParameterMapType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef ResampleInterpolatorBase	Self
typedef BaseComponentSE< TElastix >	Superclass
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer
typedef Configuration	ConfigurationType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
void	BeforeRegistration (void) override
	elxClassNameMacro ("FinalReducedDimensionBSplineInterpolator")
virtual const char *	GetClassName () const
	itkStaticConstMacro (ImageDimension, unsigned int, Superclass1::ImageDimension)
void	ReadFromFile (void) override
void	WriteToFile (void) const override
Public Member Functions inherited from itk::ReducedDimensionBSplineInterpolateImageFunction< ResampleInterpolatorBase< TElastix >::InputImageType, ResampleInterpolatorBase< TElastix >::CoordRepType, double >
OutputType	EvaluateAtContinuousIndex (const ContinuousIndexType &index) const override
CovariantVectorType	EvaluateDerivative (const PointType &point) const
CovariantVectorType	EvaluateDerivativeAtContinuousIndex (const ContinuousIndexType &x) const
virtual const char *	GetClassName () const
virtual int	GetSplineOrder () const
virtual bool	GetUseImageDirection () const
	itkStaticConstMacro (ImageDimension, unsigned int, Superclass::ImageDimension)
void	SetInputImage (const ResampleInterpolatorBase< TElastix >::InputImageType *inputData) override
void	SetSplineOrder (unsigned int SplineOrder)
virtual void	SetUseImageDirection (bool _arg)
virtual void	UseImageDirectionOff ()
virtual void	UseImageDirectionOn ()
Public Member Functions inherited from elastix::ResampleInterpolatorBase< TElastix >
virtual int	BeforeAllTransformix (void)
virtual void	CreateTransformParametersMap (ParameterMapType *paramsMap) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual const char *	GetClassName () const
virtual void	ReadFromFile (void)
virtual void	WriteToFile (void) const
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const
ElastixType *	GetElastix (void) const
RegistrationPointer	GetRegistration (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)
void	SetConfiguration (ConfigurationType *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
virtual void	BeforeRegistration (void)
virtual void	BeforeRegistrationBase (void)
virtual const char *	elxGetClassName (void) const
const char *	GetComponentLabel (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::ReducedDimensionBSplineInterpolateImageFunction< ResampleInterpolatorBase< TElastix >::InputImageType, ResampleInterpolatorBase< TElastix >::CoordRepType, double >
static Pointer	New ()
Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Protected Member Functions
	ReducedDimensionBSplineResampleInterpolator ()
	~ReducedDimensionBSplineResampleInterpolator () override
Protected Member Functions inherited from itk::ReducedDimensionBSplineInterpolateImageFunction< ResampleInterpolatorBase< TElastix >::InputImageType, ResampleInterpolatorBase< TElastix >::CoordRepType, double >
void	PrintSelf (std::ostream &os, Indent indent) const override
	ReducedDimensionBSplineInterpolateImageFunction ()
	~ReducedDimensionBSplineInterpolateImageFunction () override
Protected Member Functions inherited from elastix::ResampleInterpolatorBase< TElastix >
	ResampleInterpolatorBase ()
	~ResampleInterpolatorBase () override
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Member Functions
void	operator= (const Self &)
	ReducedDimensionBSplineResampleInterpolator (const Self &)

Additional Inherited Members
Protected Attributes inherited from itk::ReducedDimensionBSplineInterpolateImageFunction< ResampleInterpolatorBase< TElastix >::InputImageType, ResampleInterpolatorBase< TElastix >::CoordRepType, double >
CoefficientImageType::ConstPointer	m_Coefficients
TImageType::SizeType	m_DataLength
std::vector< CoefficientDataType >	m_Scratch
unsigned int	m_SplineOrder
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
ElastixPointer	m_Elastix {}
RegistrationPointer	m_Registration {}

Member Typedef Documentation

CoefficientDataType

template<class TElastix >

typedef Superclass1::CoefficientDataType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::CoefficientDataType

Definition at line 96 of file elxRDBSplineResampleInterpolator.h.

CoefficientFilter

template<class TElastix >

typedef Superclass1::CoefficientFilter elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::CoefficientFilter

Definition at line 98 of file elxRDBSplineResampleInterpolator.h.

CoefficientFilterPointer

template<class TElastix >

typedef Superclass1::CoefficientFilterPointer elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::CoefficientFilterPointer

Definition at line 99 of file elxRDBSplineResampleInterpolator.h.

CoefficientImageType

template<class TElastix >

typedef Superclass1::CoefficientImageType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::CoefficientImageType

Definition at line 97 of file elxRDBSplineResampleInterpolator.h.

ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ConfigurationPointer

Definition at line 106 of file elxRDBSplineResampleInterpolator.h.

ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ConfigurationType

Definition at line 105 of file elxRDBSplineResampleInterpolator.h.

ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ConstPointer

Definition at line 72 of file elxRDBSplineResampleInterpolator.h.

ContinuousIndexType

template<class TElastix >

typedef Superclass1::ContinuousIndexType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ContinuousIndexType

Definition at line 93 of file elxRDBSplineResampleInterpolator.h.

CovariantVectorType

template<class TElastix >

typedef Superclass1::CovariantVectorType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::CovariantVectorType

Definition at line 100 of file elxRDBSplineResampleInterpolator.h.

ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ElastixPointer

Definition at line 104 of file elxRDBSplineResampleInterpolator.h.

ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ElastixType

Typedef's from ResampleInterpolatorBase.

Definition at line 103 of file elxRDBSplineResampleInterpolator.h.

IndexType

template<class TElastix >

typedef Superclass1::IndexType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::IndexType

Definition at line 92 of file elxRDBSplineResampleInterpolator.h.

InputImageType

template<class TElastix >

typedef Superclass1::InputImageType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::InputImageType

Definition at line 91 of file elxRDBSplineResampleInterpolator.h.

Iterator

template<class TElastix >

typedef Superclass1::Iterator elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::Iterator

Definition at line 95 of file elxRDBSplineResampleInterpolator.h.

ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ITKBaseType

Definition at line 109 of file elxRDBSplineResampleInterpolator.h.

OutputType

template<class TElastix >

typedef Superclass1::OutputType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::OutputType

Typedef's inherited from the superclass.

Definition at line 90 of file elxRDBSplineResampleInterpolator.h.

Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::Pointer

Definition at line 71 of file elxRDBSplineResampleInterpolator.h.

PointType

template<class TElastix >

typedef Superclass1::PointType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::PointType

Definition at line 94 of file elxRDBSplineResampleInterpolator.h.

RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::RegistrationPointer

Definition at line 108 of file elxRDBSplineResampleInterpolator.h.

RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::RegistrationType

Definition at line 107 of file elxRDBSplineResampleInterpolator.h.

Self

template<class TElastix >

typedef ReducedDimensionBSplineResampleInterpolator elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::Self

Standard ITK-stuff.

Definition at line 65 of file elxRDBSplineResampleInterpolator.h.

Superclass1

template<class TElastix >

typedef itk::BSplineInterpolateImageFunction< typename ResampleInterpolatorBase< TElastix >::InputImageType, typename ResampleInterpolatorBase< TElastix >::CoordRepType, double > elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::Superclass1

Definition at line 69 of file elxRDBSplineResampleInterpolator.h.

Superclass2

template<class TElastix >

typedef ResampleInterpolatorBase< TElastix > elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::Superclass2

Definition at line 70 of file elxRDBSplineResampleInterpolator.h.

Constructor & Destructor Documentation

ReducedDimensionBSplineResampleInterpolator() [1/2]

template<class TElastix >

elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ReducedDimensionBSplineResampleInterpolator ( )

inlineprotected

The constructor.

Definition at line 125 of file elxRDBSplineResampleInterpolator.h.

~ReducedDimensionBSplineResampleInterpolator()

template<class TElastix >

elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::~ReducedDimensionBSplineResampleInterpolator ( )

inlineoverrideprotected

The destructor.

Definition at line 127 of file elxRDBSplineResampleInterpolator.h.

ReducedDimensionBSplineResampleInterpolator() [2/2]

template<class TElastix >

elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ReducedDimensionBSplineResampleInterpolator ( const Self &  )

private

The private constructor.

Member Function Documentation

BeforeRegistration()

template<class TElastix >

void elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::BeforeRegistration ( void  )

overridevirtual

Execute stuff before the actual registration:

• Set the spline order.

Reimplemented from elastix::BaseComponent.

elxClassNameMacro()

template<class TElastix >

elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::elxClassNameMacro

(

"FinalReducedDimensionBSplineInterpolator"

)

Name of this class. Use this name in the parameter file to select this specific resample interpolator.
example: (ResampleInterpolator "FinalBSplineInterpolator")

GetClassName()

template<class TElastix >

virtual const char * elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::ResampleInterpolatorBase< TElastix >.

itkStaticConstMacro()

template<class TElastix >

elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::itkStaticConstMacro	(	ImageDimension	,
		unsigned int	,
		Superclass1::ImageDimension
	)

Dimension of the image.

New()

template<class TElastix >

static Pointer elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TElastix >

void elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::operator= ( const Self &  )

private

The private copy constructor.

ReadFromFile()

template<class TElastix >

void elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::ReadFromFile ( void  )

overridevirtual

Function to read transform-parameters from a file.

Reimplemented from elastix::ResampleInterpolatorBase< TElastix >.

WriteToFile()

template<class TElastix >

void elastix::ReducedDimensionBSplineResampleInterpolator< TElastix >::WriteToFile ( void  ) const

overridevirtual

Function to write transform-parameters to a file.

Reimplemented from elastix::ResampleInterpolatorBase< TElastix >.