elastix::OptimizerBase< TElastix > Class Template Reference

#include <elxOptimizerBase.h>

Detailed Description

template<class TElastix>
class elastix::OptimizerBase< TElastix >

This class is the elastix base class for all Optimizers.

This class contains all the common functionality for Optimizers.

The parameters used in this class are:

Parameters:

NewSamplesEveryIteration: if this flag is set to "true" some optimizers ask the metric to select a new set of spatial samples in every iteration. This, if used in combination with the correct optimizer (such as the StandardGradientDescent), and ImageSampler (Random, RandomCoordinate, or RandomSparseMask), allows for a very low number of spatial samples (around 2000), even with large images and transforms with a large number of parameters.
Choose one from {"true", "false"} for every resolution.
example: (NewSamplesEveryIteration "true" "true" "true")
Default is "false" for every resolution.

Definition at line 53 of file elxOptimizerBase.h.

Inheritance diagram for elastix::OptimizerBase< TElastix >:

Public Types
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef itk::Optimizer	ITKBaseType
typedef ITKBaseType::ParametersType	ParametersType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef OptimizerBase	Self
typedef BaseComponentSE< TElastix >	Superclass
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer
typedef Configuration	ConfigurationType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
void	AfterRegistrationBase (void) override
void	BeforeEachResolutionBase () override
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual const char *	GetClassName () const
virtual void	SetCurrentPositionPublic (const ParametersType &param)
virtual void	SetSinusScales (double amplitude, double frequency, unsigned long numberOfParameters)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const
ElastixType *	GetElastix (void) const
RegistrationPointer	GetRegistration (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)
void	SetConfiguration (ConfigurationType *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
virtual void	BeforeRegistration (void)
virtual void	BeforeRegistrationBase (void)
virtual const char *	elxGetClassName (void) const
const char *	GetComponentLabel (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Protected Member Functions
virtual bool	GetNewSamplesEveryIteration (void) const
	OptimizerBase ()
virtual void	SelectNewSamples (void)
	~OptimizerBase () override
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Member Functions
void	operator= (const Self &)
	OptimizerBase (const Self &)

Private Attributes
bool	m_NewSamplesEveryIteration

Additional Inherited Members
Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
ElastixPointer	m_Elastix {}
RegistrationPointer	m_Registration {}

Member Typedef Documentation

ConfigurationPointer

template<class TElastix >

typedef Superclass::ConfigurationPointer elastix::OptimizerBase< TElastix >::ConfigurationPointer

Definition at line 68 of file elxOptimizerBase.h.

ConfigurationType

template<class TElastix >

typedef Superclass::ConfigurationType elastix::OptimizerBase< TElastix >::ConfigurationType

Definition at line 67 of file elxOptimizerBase.h.

ElastixPointer

template<class TElastix >

typedef Superclass::ElastixPointer elastix::OptimizerBase< TElastix >::ElastixPointer

Definition at line 66 of file elxOptimizerBase.h.

ElastixType

template<class TElastix >

typedef Superclass::ElastixType elastix::OptimizerBase< TElastix >::ElastixType

Typedefs inherited from Elastix.

Definition at line 65 of file elxOptimizerBase.h.

ITKBaseType

template<class TElastix >

typedef itk::Optimizer elastix::OptimizerBase< TElastix >::ITKBaseType

ITKBaseType.

Definition at line 73 of file elxOptimizerBase.h.

ParametersType

template<class TElastix >

typedef ITKBaseType::ParametersType elastix::OptimizerBase< TElastix >::ParametersType

Typedef needed for the SetCurrentPositionPublic function.

Definition at line 76 of file elxOptimizerBase.h.

RegistrationPointer

template<class TElastix >

typedef Superclass::RegistrationPointer elastix::OptimizerBase< TElastix >::RegistrationPointer

Definition at line 70 of file elxOptimizerBase.h.

RegistrationType

template<class TElastix >

typedef Superclass::RegistrationType elastix::OptimizerBase< TElastix >::RegistrationType

Definition at line 69 of file elxOptimizerBase.h.

Self

template<class TElastix >

typedef OptimizerBase elastix::OptimizerBase< TElastix >::Self

Standard ITK-stuff.

Definition at line 58 of file elxOptimizerBase.h.

Superclass

template<class TElastix >

typedef BaseComponentSE< TElastix > elastix::OptimizerBase< TElastix >::Superclass

Definition at line 59 of file elxOptimizerBase.h.

Constructor & Destructor Documentation

OptimizerBase() [1/2]

template<class TElastix >

elastix::OptimizerBase< TElastix >::OptimizerBase ( )

protected

The constructor.

~OptimizerBase()

template<class TElastix >

elastix::OptimizerBase< TElastix >::~OptimizerBase ( )

inlineoverrideprotected

The destructor.

Definition at line 116 of file elxOptimizerBase.h.

OptimizerBase() [2/2]

template<class TElastix >

elastix::OptimizerBase< TElastix >::OptimizerBase ( const Self &  )

private

The private constructor.

Member Function Documentation

AfterRegistrationBase()

template<class TElastix >

void elastix::OptimizerBase< TElastix >::AfterRegistrationBase ( void  )

overridevirtual

Execute stuff after registration:

• Compute and print MD5 hash of the transform parameters.

Reimplemented from elastix::BaseComponent.

BeforeEachResolutionBase()

template<class TElastix >

void elastix::OptimizerBase< TElastix >::BeforeEachResolutionBase ( )

overridevirtual

Execute stuff before each new pyramid resolution:

• Find out if new samples are used every new iteration in this resolution.

Reimplemented from elastix::BaseComponent.

GetAsITKBaseType() [1/2]

template<class TElastix >

virtual ITKBaseType * elastix::OptimizerBase< TElastix >::GetAsITKBaseType ( void  )

inlinevirtual

Cast to ITKBaseType.

Definition at line 79 of file elxOptimizerBase.h.

GetAsITKBaseType() [2/2]

template<class TElastix >

virtual const ITKBaseType * elastix::OptimizerBase< TElastix >::GetAsITKBaseType ( void  ) const

inlinevirtual

Cast to ITKBaseType, to use in const functions.

Definition at line 86 of file elxOptimizerBase.h.

GetClassName()

template<class TElastix >

virtual const char * elastix::OptimizerBase< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented in elastix::AdaGrad< TElastix >, elastix::AdaptiveStochasticGradientDescent< TElastix >, elastix::AdaptiveStochasticLBFGS< TElastix >, elastix::AdaptiveStochasticVarianceReducedGradient< TElastix >, elastix::CMAEvolutionStrategy< TElastix >, elastix::ConjugateGradient< TElastix >, elastix::ConjugateGradientFRPR< TElastix >, elastix::FiniteDifferenceGradientDescent< TElastix >, elastix::FullSearch< TElastix >, elastix::Powell< TElastix >, elastix::PreconditionedGradientDescent< TElastix >, elastix::PreconditionedStochasticGradientDescent< TElastix >, elastix::QuasiNewtonLBFGS< TElastix >, elastix::RegularStepGradientDescent< TElastix >, elastix::RSGDEachParameterApart< TElastix >, elastix::Simplex< TElastix >, elastix::SimultaneousPerturbation< TElastix >, and elastix::StandardGradientDescent< TElastix >.

GetNewSamplesEveryIteration()

template<class TElastix >

virtual bool elastix::OptimizerBase< TElastix >::GetNewSamplesEveryIteration ( void  ) const

protectedvirtual

Check whether the user asked to select new samples every iteration.

operator=()

template<class TElastix >

void elastix::OptimizerBase< TElastix >::operator= ( const Self &  )

private

The private copy constructor.

SelectNewSamples()

template<class TElastix >

virtual void elastix::OptimizerBase< TElastix >::SelectNewSamples ( void  )

protectedvirtual

Force the metric to base its computation on a new subset of image samples. Not every metric may have implemented this.

SetCurrentPositionPublic()

template<class TElastix >

virtual void elastix::OptimizerBase< TElastix >::SetCurrentPositionPublic ( const ParametersType &  param )

virtual

Add empty SetCurrentPositionPublic, so this function is known in every inherited class.

SetSinusScales()

template<class TElastix >

virtual void elastix::OptimizerBase< TElastix >::SetSinusScales ( double  amplitude, double  frequency, unsigned long  numberOfParameters  )

virtual

Method that sets the scales defined by a sinus scale[i] = amplitude^( sin(i/nrofparam*2pi*frequency) )

Field Documentation

m_NewSamplesEveryIteration

template<class TElastix >

bool elastix::OptimizerBase< TElastix >::m_NewSamplesEveryIteration

private

Member variable to store the user preference for using new samples each iteration.

Definition at line 136 of file elxOptimizerBase.h.