elastix::NormalizedMutualInformationMetric< TElastix > Class Template Reference

#include <elxNormalizedMutualInformationMetric.h>

Detailed Description

template<class TElastix>
class elastix::NormalizedMutualInformationMetric< TElastix >

A metric based on the itk::ParzenWindowNormalizedMutualInformationImageToImageMetric.

The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "NormalizedMutualInformation")

NumberOfHistogramBins: The size of the histogram. Must be given for each resolution, or for all resolutions at once.
example: (NumberOfHistogramBins 32 32 64)
The default is 32 for each resolution.

NumberOfFixedHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfFixedHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.

NumberOfMovingHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfMovingHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.

FixedKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (FixedKernelBSplineOrder 0 1 1)
The default value is 0.

MovingKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (MovingKernelBSplineOrder 3 3 3)
The default value is 3.

FixedLimitRangeRatio: The relative extension of the intensity range of the fixed image.
If your image has gray values from 0 to 1000 and the FixedLimitRangeRatio is 0.001, the joint histogram will expect fixed image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the fixed image.
example: (FixedLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.

MovingLimitRangeRatio: The relative extension of the intensity range of the moving image.
If your image has gray values from 0 to 1000 and the MovingLimitRangeRatio is 0.001, the joint histogram will expect moving image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the moving image.
example: (MovingLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.

See also

ParzenWindowNormalizedMutualInformationImageToImageMetric

Definition at line 73 of file elxNormalizedMutualInformationMetric.h.

Inheritance diagram for elastix::NormalizedMutualInformationMetric< TElastix >:

Public Types
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass1::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass1::DerivativeType	DerivativeType
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass1::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass1::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass1::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass1::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass1::FixedImageMaskType	FixedImageMaskType
typedef Superclass1::FixedImagePixelType	FixedImagePixelType
typedef Superclass1::FixedImageRegionType	FixedImageRegionType
typedef Superclass1::FixedImageType	FixedImageType
typedef Superclass1::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass1::GradientImageFilterType	GradientImageFilterType
typedef Superclass1::GradientImagePointer	GradientImagePointer
typedef Superclass1::GradientImageType	GradientImageType
typedef Superclass1::GradientPixelType	GradientPixelType
typedef Superclass1::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass1::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass1::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass1::ImageSamplerType	ImageSamplerType
typedef Superclass1::InputPointType	InputPointType
typedef Superclass1::InterpolatorPointer	InterpolatorPointer
typedef Superclass1::InterpolatorType	InterpolatorType
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass1::MeasureType	MeasureType
typedef Superclass1::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass1::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef Superclass1::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass1::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass1::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass1::MovingImageMaskType	MovingImageMaskType
typedef Superclass1::MovingImagePixelType	MovingImagePixelType
typedef Superclass1::MovingImageRegionType	MovingImageRegionType
typedef Superclass1::MovingImageType	MovingImageType
typedef Superclass1::OutputPointType	OutputPointType
typedef Superclass1::ParametersType	ParametersType
typedef itk::SmartPointer< Self >	Pointer
typedef Superclass1::RealType	RealType
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef NormalizedMutualInformationMetric	Self
typedef itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >	Superclass1
typedef MetricBase< TElastix >	Superclass2
typedef Superclass1::TransformJacobianType	TransformJacobianType
typedef Superclass1::TransformParametersType	TransformParametersType
typedef Superclass1::TransformPointer	TransformPointer
typedef Superclass1::TransformType	TransformType
Public Types inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef Superclass::FixedImagePixelType	FixedImagePixelType
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass::ImageSamplerType	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImageRegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef ParzenWindowNormalizedMutualInformationImageToImageMetric	Self
typedef ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::DerivativeValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef Superclass::FixedImagePixelType	FixedImagePixelType
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass::ImageSamplerType	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImageRegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef ParzenWindowHistogramImageToImageMetric	Self
typedef AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass
typedef Superclass::ThreaderType	ThreaderType
typedef Superclass::ThreadInfoType	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType
typedef BSplineOrder1TransformType::Pointer	BSplineOrder1TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType
typedef BSplineOrder2TransformType::Pointer	BSplineOrder2TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType
typedef BSplineOrder3TransformType::Pointer	BSplineOrder3TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension >	CombinationTransformType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType
typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer
typedef LimiterFunctionBase< RealType, FixedImageDimension >	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskSpatialObject2Type
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef FixedImageType::PixelType	FixedImagePixelType
typedef FixedImageType::Pointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef vnl_sparse_matrix< HessianValueType >	HessianType
typedef DerivativeType::ValueType	HessianValueType
typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer
typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType
typedef ImageSamplerType::Pointer	ImageSamplerPointer
typedef ImageSamplerBase< FixedImageType >	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType
typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType
typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer
typedef LimiterFunctionBase< RealType, MovingImageDimension >	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskSpatialObject2Type
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef MovingImageType::Pointer	MovingImagePointer
typedef MovingImageType::RegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef TransformType::ScalarType	ScalarType
typedef AdvancedImageToImageMetric	Self
typedef ImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass
typedef itk::PlatformMultiThreader	ThreaderType
typedef ThreaderType::WorkUnitInfo	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType >	AdvancedMetricType
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ITKBaseType::ParametersValueType	CoordinateRepresentationType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ElastixType::FixedImageType	FixedImageType
typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	FixedPointSetType
typedef FixedImageType::PointType	FixedPointType
typedef FixedPointType::ValueType	FixedPointValueType
typedef AdvancedMetricType::ImageSamplerType	ImageSamplerBaseType
typedef itk::SingleValuedCostFunction	ITKBaseType
typedef ITKBaseType::MeasureType	MeasureType
typedef AdvancedMetricType::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef ElastixType::MovingImageType	MovingImageType
typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	MovingPointSetType
typedef MovingImageType::PointType	MovingPointType
typedef MovingPointType::ValueType	MovingPointValueType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef MetricBase	Self
typedef BaseComponentSE< TElastix >	Superclass
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer
typedef Configuration	ConfigurationType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
void	BeforeEachResolution (void) override
	elxClassNameMacro ("NormalizedMutualInformation")
virtual const char *	GetClassName () const
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
Public Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const char *	GetClassName () const
MeasureType	GetValue (const ParametersType &parameters) const override
void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
Public Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const char *	GetClassName () const
void	GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const override
virtual double	GetFiniteDifferencePerturbation () const
virtual unsigned int	GetFixedKernelBSplineOrder () const
virtual unsigned int	GetMovingKernelBSplineOrder () const
virtual unsigned long	GetNumberOfFixedHistogramBins ()
virtual unsigned long	GetNumberOfMovingHistogramBins ()
virtual bool	GetUseDerivative () const
virtual const bool &	GetUseExplicitPDFDerivatives ()
virtual bool	GetUseFiniteDifferenceDerivative () const
void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SetFiniteDifferencePerturbation (double _arg)
virtual void	SetFixedKernelBSplineOrder (unsigned int _arg)
virtual void	SetMovingKernelBSplineOrder (unsigned int _arg)
virtual void	SetNumberOfFixedHistogramBins (unsigned long _arg)
virtual void	SetNumberOfMovingHistogramBins (unsigned long _arg)
virtual void	SetUseDerivative (bool _arg)
virtual void	SetUseExplicitPDFDerivatives (bool _arg)
virtual void	SetUseFiniteDifferenceDerivative (bool _arg)
virtual void	UseExplicitPDFDerivativesOff ()
virtual void	UseExplicitPDFDerivativesOn ()
Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const char *	GetClassName () const
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()
virtual double	GetFixedLimitRangeRatio () const
virtual ImageSamplerType *	GetImageSampler (void) const
virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()
virtual const MovingImageLimiterType *	GetMovingImageLimiter ()
virtual double	GetMovingLimitRangeRatio () const
virtual double	GetRequiredRatioOfValidSamples () const
virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const
virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformType *	GetTransform (void) const override
virtual bool	GetUseFixedImageLimiter () const
virtual bool	GetUseImageSampler () const
virtual const bool &	GetUseMetricSingleThreaded ()
virtual bool	GetUseMovingImageDerivativeScales () const
virtual bool	GetUseMovingImageLimiter () const
virtual const bool &	GetUseMultiThread ()
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void	SetFixedLimitRangeRatio (double _arg)
virtual void	SetImageSampler (ImageSamplerType *_arg)
virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void	SetMovingLimitRangeRatio (double _arg)
virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
virtual void	SetRequiredRatioOfValidSamples (double _arg)
virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
virtual void	SetTransform (AdvancedTransformType *arg)
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	SetUseMovingImageDerivativeScales (bool _arg)
virtual void	SetUseMultiThread (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
virtual void	UseMultiThreadOff ()
virtual void	UseMultiThreadOn ()
Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase (void) override
void	BeforeEachResolutionBase (void) override
virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler (void) const
virtual bool	GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual const char *	GetClassName () const
virtual MeasureType	GetCurrentExactMetricValue (void) const
virtual bool	GetShowExactMetricValue (void) const
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SelectNewSamples (void)
virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const
ElastixType *	GetElastix (void) const
RegistrationPointer	GetRegistration (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)
void	SetConfiguration (ConfigurationType *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
virtual void	BeforeRegistration (void)
virtual void	BeforeRegistrationBase (void)
virtual const char *	elxGetClassName (void) const
const char *	GetComponentLabel (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static Pointer	New ()
Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Protected Member Functions
	NormalizedMutualInformationMetric ()
	~NormalizedMutualInformationMetric () override
Protected Member Functions inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void	ComputeLogMarginalPDF (MarginalPDFType &pdf) const
virtual MeasureType	ComputeNormalizedMutualInformation (MeasureType &jointEntropy) const
	ParzenWindowNormalizedMutualInformationImageToImageMetric ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~ParzenWindowNormalizedMutualInformationImageToImageMetric () override
Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
void	AfterThreadedComputePDFs (void) const
virtual void	ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType *incrementalPDF, IncrementalMarginalPDFType *fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const
virtual void	ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, const unsigned int &direction) const
virtual void	ComputePDFs (const ParametersType &parameters) const
virtual void	ComputePDFsAndIncrementalPDFs (const ParametersType &parameters) const
virtual void	ComputePDFsAndPDFDerivatives (const ParametersType &parameters) const
virtual void	ComputePDFsSingleThreaded (const ParametersType &parameters) const
void	EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const
virtual void	GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
virtual void	GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const
virtual void	InitializeHistograms (void)
virtual void	InitializeKernels (void)
void	InitializeThreadingParameters (void) const override
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct, AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, ParzenWindowHistogramGetValueAndDerivativePerThreadStruct, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)
void	LaunchComputePDFsThreaderCallback (void) const
virtual void	NormalizeJointPDF (JointPDFType *pdf, const double &factor) const
virtual void	NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, const double &factor) const
	ParzenWindowHistogramImageToImageMetric ()
void	PrintSelf (std::ostream &os, Indent indent) const override
void	ThreadedComputePDFs (ThreadIdType threadId)
virtual void	UpdateJointPDFAndDerivatives (const RealType &fixedImageValue, const RealType &movingImageValue, const DerivativeType *imageJacobian, const NonZeroJacobianIndicesType *nzji, JointPDFType *jointPDF) const
virtual void	UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const
void	UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const
	~ParzenWindowHistogramImageToImageMetric () override
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
	AdvancedImageToImageMetric ()
virtual void	AfterThreadedGetValue (MeasureType &value) const
virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
virtual void	CheckForAdvancedTransform (void)
virtual void	CheckForBSplineInterpolator (void)
virtual void	CheckForBSplineTransform (void) const
virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
virtual void	InitializeImageSampler (void)
virtual void	InitializeLimiters (void)
virtual void	InitializeThreadingParameters (void) const
virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)
void	LaunchGetValueAndDerivativeThreaderCallback (void) const
void	LaunchGetValueThreaderCallback (void) const
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetUseFixedImageLimiter (bool _arg)
virtual void	SetUseImageSampler (bool _arg)
virtual void	SetUseMovingImageLimiter (bool _arg)
virtual void	ThreadedGetValue (ThreadIdType threadID)
virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)
virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
	~AdvancedImageToImageMetric () override
Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)
	MetricBase ()
	~MetricBase () override
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Member Functions
	NormalizedMutualInformationMetric (const Self &)
void	operator= (const Self &)

Additional Inherited Members
Protected Types inherited from itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType
typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType
typedef Superclass::FixedImageIndexType	FixedImageIndexType
typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType
typedef Superclass::FixedImagePointType	FixedImagePointType
typedef Superclass::IncrementalMarginalPDFType	IncrementalMarginalPDFType
typedef Superclass::JointPDFDerivativesIndexType	JointPDFDerivativesIndexType
typedef Superclass::JointPDFDerivativesRegionType	JointPDFDerivativesRegionType
typedef Superclass::JointPDFDerivativesSizeType	JointPDFDerivativesSizeType
typedef Superclass::JointPDFDerivativesType	JointPDFDerivativesType
typedef Superclass::JointPDFIndexType	JointPDFIndexType
typedef Superclass::JointPDFRegionType	JointPDFRegionType
typedef Superclass::JointPDFSizeType	JointPDFSizeType
typedef Superclass::JointPDFType	JointPDFType
typedef Superclass::KernelFunctionType	KernelFunctionType
typedef Superclass::MarginalPDFType	MarginalPDFType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType
typedef Superclass::MovingImageIndexType	MovingImageIndexType
typedef Superclass::MovingImagePointType	MovingImagePointType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef Superclass::ParzenValueContainerType	ParzenValueContainerType
typedef Superclass::PDFValueType	PDFValueType
Protected Types inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType
typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType
typedef Superclass::FixedImageIndexType	FixedImageIndexType
typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType
typedef Superclass::FixedImagePointType	FixedImagePointType
typedef IncrementalMarginalPDFType::IndexType	IncrementalMarginalPDFIndexType
typedef IncrementalMarginalPDFType::Pointer	IncrementalMarginalPDFPointer
typedef IncrementalMarginalPDFType::RegionType	IncrementalMarginalPDFRegionType
typedef IncrementalMarginalPDFType::SizeType	IncrementalMarginalPDFSizeType
typedef Image< PDFValueType, 2 >	IncrementalMarginalPDFType
typedef JointPDFDerivativesType::IndexType	JointPDFDerivativesIndexType
typedef JointPDFDerivativesType::Pointer	JointPDFDerivativesPointer
typedef JointPDFDerivativesType::RegionType	JointPDFDerivativesRegionType
typedef JointPDFDerivativesType::SizeType	JointPDFDerivativesSizeType
typedef Image< PDFDerivativeValueType, 3 >	JointPDFDerivativesType
typedef JointPDFType::IndexType	JointPDFIndexType
typedef JointPDFType::Pointer	JointPDFPointer
typedef JointPDFType::RegionType	JointPDFRegionType
typedef JointPDFType::SizeType	JointPDFSizeType
typedef Image< PDFValueType, 2 >	JointPDFType
typedef KernelFunctionType::Pointer	KernelFunctionPointer
typedef KernelFunctionBase2< PDFValueType >	KernelFunctionType
typedef Array< PDFValueType >	MarginalPDFType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType
typedef Superclass::MovingImageIndexType	MovingImageIndexType
typedef Superclass::MovingImagePointType	MovingImagePointType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef FixedImageType::OffsetValueType	OffsetValueType
typedef Array< PDFValueType >	ParzenValueContainerType
typedef float	PDFDerivativeValueType
typedef double	PDFValueType
Protected Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType
typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType
typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer
typedef GradientImageFilter< MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType
typedef FixedImageType::IndexType	FixedImageIndexType
typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType
typedef TransformType::InputPointType	FixedImagePointType
typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer
typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType
typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType
typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType
typedef MovingImageType::IndexType	MovingImageIndexType
typedef TransformType::OutputPointType	MovingImagePointType
typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer
typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType
Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer	ExactMetricImageSamplerPointer
typedef itk::ImageGridSampler< FixedImageType >	ExactMetricImageSamplerType
typedef ExactMetricImageSamplerType::SampleGridSpacingType	ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType	ParametersType
Static Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ComputePDFsThreaderCallback (void *arg)
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)
Protected Attributes inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
double	m_Alpha
KernelFunctionPointer	m_DerivativeMovingKernel
double	m_FixedImageBinSize
MarginalPDFType	m_FixedImageMarginalPDF
double	m_FixedImageNormalizedMin
IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFLeft
IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFRight
KernelFunctionPointer	m_FixedKernel
double	m_FixedParzenTermToIndexOffset
JointPDFDerivativesPointer	m_IncrementalJointPDFLeft
JointPDFDerivativesPointer	m_IncrementalJointPDFRight
JointPDFPointer	m_JointPDF
JointPDFDerivativesPointer	m_JointPDFDerivatives
JointPDFRegionType	m_JointPDFWindow
double	m_MovingImageBinSize
MarginalPDFType	m_MovingImageMarginalPDF
double	m_MovingImageNormalizedMin
IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFLeft
IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFRight
KernelFunctionPointer	m_MovingKernel
double	m_MovingParzenTermToIndexOffset
AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct *	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariables
ThreadIdType	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariablesSize
ParzenWindowHistogramMultiThreaderParameterType	m_ParzenWindowHistogramThreaderParameters
DerivativeType	m_PerturbedAlphaLeft
DerivativeType	m_PerturbedAlphaRight
std::vector< JointPDFPointer >	m_ThreaderJointPDFs
Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
AdvancedTransformType::Pointer	m_AdvancedTransform
BSplineInterpolatorPointer	m_BSplineInterpolator
BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat
CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter
FixedImageLimiterPointer	m_FixedImageLimiter
FixedImageLimiterOutputType	m_FixedImageMaxLimit
FixedImageLimiterOutputType	m_FixedImageMinLimit
FixedImagePixelType	m_FixedImageTrueMax
FixedImagePixelType	m_FixedImageTrueMin
double	m_FixedLimitRangeRatio
AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables
ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize
AlignedGetValuePerThreadStruct *	m_GetValuePerThreadVariables
ThreadIdType	m_GetValuePerThreadVariablesSize
ImageSamplerPointer	m_ImageSampler
bool	m_InterpolatorIsBSpline
bool	m_InterpolatorIsBSplineFloat
bool	m_InterpolatorIsLinear
bool	m_InterpolatorIsReducedBSpline
LinearInterpolatorPointer	m_LinearInterpolator
MovingImageLimiterPointer	m_MovingImageLimiter
MovingImageLimiterOutputType	m_MovingImageMaxLimit
MovingImageLimiterOutputType	m_MovingImageMinLimit
MovingImagePixelType	m_MovingImageTrueMax
MovingImagePixelType	m_MovingImageTrueMin
double	m_MovingLimitRangeRatio
ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator
MultiThreaderParameterType	m_ThreaderMetricParameters
bool	m_TransformIsAdvanced
bool	m_TransformIsBSpline
bool	m_UseMetricSingleThreaded
bool	m_UseMultiThread
bool	m_UseOpenMP
Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue
unsigned int	m_ExactMetricEachXNumberOfIterations
ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerPointer	m_ExactMetricSampler
bool	m_ShowExactMetricValue
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
ElastixPointer	m_Elastix {}
RegistrationPointer	m_Registration {}

Member Typedef Documentation

ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::NormalizedMutualInformationMetric< TElastix >::ConfigurationPointer

Definition at line 162 of file elxNormalizedMutualInformationMetric.h.

ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::NormalizedMutualInformationMetric< TElastix >::ConfigurationType

Definition at line 161 of file elxNormalizedMutualInformationMetric.h.

ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::NormalizedMutualInformationMetric< TElastix >::ConstPointer

Definition at line 89 of file elxNormalizedMutualInformationMetric.h.

CoordinateRepresentationType

template<class TElastix >

typedef Superclass1::CoordinateRepresentationType elastix::NormalizedMutualInformationMetric< TElastix >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 106 of file elxNormalizedMutualInformationMetric.h.

DerivativeType

template<class TElastix >

typedef Superclass1::DerivativeType elastix::NormalizedMutualInformationMetric< TElastix >::DerivativeType

Definition at line 132 of file elxNormalizedMutualInformationMetric.h.

ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::NormalizedMutualInformationMetric< TElastix >::ElastixPointer

Definition at line 160 of file elxNormalizedMutualInformationMetric.h.

ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::NormalizedMutualInformationMetric< TElastix >::ElastixType

Typedef's inherited from Elastix.

Definition at line 159 of file elxNormalizedMutualInformationMetric.h.

FixedImageConstPointer

template<class TElastix >

typedef Superclass1::FixedImageConstPointer elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageConstPointer

Definition at line 111 of file elxNormalizedMutualInformationMetric.h.

FixedImageLimiterOutputType

template<class TElastix >

typedef Superclass1::FixedImageLimiterOutputType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageLimiterOutputType

Definition at line 144 of file elxNormalizedMutualInformationMetric.h.

FixedImageLimiterType

template<class TElastix >

typedef Superclass1::FixedImageLimiterType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageLimiterType

Definition at line 141 of file elxNormalizedMutualInformationMetric.h.

FixedImageMaskPointer

template<class TElastix >

typedef Superclass1::FixedImageMaskPointer elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageMaskPointer

Definition at line 128 of file elxNormalizedMutualInformationMetric.h.

FixedImageMaskType

template<class TElastix >

typedef Superclass1::FixedImageMaskType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageMaskType

Definition at line 127 of file elxNormalizedMutualInformationMetric.h.

FixedImagePixelType

template<class TElastix >

typedef Superclass1::FixedImagePixelType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImagePixelType

Definition at line 134 of file elxNormalizedMutualInformationMetric.h.

FixedImageRegionType

template<class TElastix >

typedef Superclass1::FixedImageRegionType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageRegionType

Definition at line 112 of file elxNormalizedMutualInformationMetric.h.

FixedImageType

template<class TElastix >

typedef Superclass1::FixedImageType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageType

Definition at line 110 of file elxNormalizedMutualInformationMetric.h.

GradientImageFilterPointer

template<class TElastix >

typedef Superclass1::GradientImageFilterPointer elastix::NormalizedMutualInformationMetric< TElastix >::GradientImageFilterPointer

Definition at line 126 of file elxNormalizedMutualInformationMetric.h.

GradientImageFilterType

template<class TElastix >

typedef Superclass1::GradientImageFilterType elastix::NormalizedMutualInformationMetric< TElastix >::GradientImageFilterType

Definition at line 125 of file elxNormalizedMutualInformationMetric.h.

GradientImagePointer

template<class TElastix >

typedef Superclass1::GradientImagePointer elastix::NormalizedMutualInformationMetric< TElastix >::GradientImagePointer

Definition at line 124 of file elxNormalizedMutualInformationMetric.h.

GradientImageType

template<class TElastix >

typedef Superclass1::GradientImageType elastix::NormalizedMutualInformationMetric< TElastix >::GradientImageType

Definition at line 123 of file elxNormalizedMutualInformationMetric.h.

GradientPixelType

template<class TElastix >

typedef Superclass1::GradientPixelType elastix::NormalizedMutualInformationMetric< TElastix >::GradientPixelType

Definition at line 122 of file elxNormalizedMutualInformationMetric.h.

ImageSampleContainerPointer

template<class TElastix >

typedef Superclass1::ImageSampleContainerPointer elastix::NormalizedMutualInformationMetric< TElastix >::ImageSampleContainerPointer

Definition at line 140 of file elxNormalizedMutualInformationMetric.h.

ImageSampleContainerType

template<class TElastix >

typedef Superclass1::ImageSampleContainerType elastix::NormalizedMutualInformationMetric< TElastix >::ImageSampleContainerType

Definition at line 138 of file elxNormalizedMutualInformationMetric.h.

ImageSamplerPointer

template<class TElastix >

typedef Superclass1::ImageSamplerPointer elastix::NormalizedMutualInformationMetric< TElastix >::ImageSamplerPointer

Definition at line 137 of file elxNormalizedMutualInformationMetric.h.

ImageSamplerType

template<class TElastix >

typedef Superclass1::ImageSamplerType elastix::NormalizedMutualInformationMetric< TElastix >::ImageSamplerType

Definition at line 136 of file elxNormalizedMutualInformationMetric.h.

InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::NormalizedMutualInformationMetric< TElastix >::InputPointType

Definition at line 115 of file elxNormalizedMutualInformationMetric.h.

InterpolatorPointer

template<class TElastix >

typedef Superclass1::InterpolatorPointer elastix::NormalizedMutualInformationMetric< TElastix >::InterpolatorPointer

Definition at line 120 of file elxNormalizedMutualInformationMetric.h.

InterpolatorType

template<class TElastix >

typedef Superclass1::InterpolatorType elastix::NormalizedMutualInformationMetric< TElastix >::InterpolatorType

Definition at line 119 of file elxNormalizedMutualInformationMetric.h.

ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::NormalizedMutualInformationMetric< TElastix >::ITKBaseType

Definition at line 165 of file elxNormalizedMutualInformationMetric.h.

MeasureType

template<class TElastix >

typedef Superclass1::MeasureType elastix::NormalizedMutualInformationMetric< TElastix >::MeasureType

Definition at line 131 of file elxNormalizedMutualInformationMetric.h.

MovingImageConstPointer

template<class TElastix >

typedef Superclass1::MovingImageConstPointer elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageConstPointer

Definition at line 109 of file elxNormalizedMutualInformationMetric.h.

MovingImageDerivativeScalesType

template<class TElastix >

typedef Superclass1::MovingImageDerivativeScalesType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageDerivativeScalesType

Definition at line 148 of file elxNormalizedMutualInformationMetric.h.

MovingImageLimiterOutputType

template<class TElastix >

typedef Superclass1::MovingImageLimiterOutputType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageLimiterOutputType

Definition at line 146 of file elxNormalizedMutualInformationMetric.h.

MovingImageLimiterType

template<class TElastix >

typedef Superclass1::MovingImageLimiterType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageLimiterType

Definition at line 142 of file elxNormalizedMutualInformationMetric.h.

MovingImageMaskPointer

template<class TElastix >

typedef Superclass1::MovingImageMaskPointer elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageMaskPointer

Definition at line 130 of file elxNormalizedMutualInformationMetric.h.

MovingImageMaskType

template<class TElastix >

typedef Superclass1::MovingImageMaskType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageMaskType

Definition at line 129 of file elxNormalizedMutualInformationMetric.h.

MovingImagePixelType

template<class TElastix >

typedef Superclass1::MovingImagePixelType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImagePixelType

Definition at line 108 of file elxNormalizedMutualInformationMetric.h.

MovingImageRegionType

template<class TElastix >

typedef Superclass1::MovingImageRegionType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageRegionType

Definition at line 135 of file elxNormalizedMutualInformationMetric.h.

MovingImageType

template<class TElastix >

typedef Superclass1::MovingImageType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageType

Definition at line 107 of file elxNormalizedMutualInformationMetric.h.

OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::NormalizedMutualInformationMetric< TElastix >::OutputPointType

Definition at line 116 of file elxNormalizedMutualInformationMetric.h.

ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::NormalizedMutualInformationMetric< TElastix >::ParametersType

Definition at line 133 of file elxNormalizedMutualInformationMetric.h.

Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::NormalizedMutualInformationMetric< TElastix >::Pointer

Definition at line 88 of file elxNormalizedMutualInformationMetric.h.

RealType

template<class TElastix >

typedef Superclass1::RealType elastix::NormalizedMutualInformationMetric< TElastix >::RealType

Definition at line 121 of file elxNormalizedMutualInformationMetric.h.

RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::NormalizedMutualInformationMetric< TElastix >::RegistrationPointer

Definition at line 164 of file elxNormalizedMutualInformationMetric.h.

RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::NormalizedMutualInformationMetric< TElastix >::RegistrationType

Definition at line 163 of file elxNormalizedMutualInformationMetric.h.

Self

template<class TElastix >

typedef NormalizedMutualInformationMetric elastix::NormalizedMutualInformationMetric< TElastix >::Self

Standard ITK-stuff.

Definition at line 83 of file elxNormalizedMutualInformationMetric.h.

Superclass1

template<class TElastix >

typedef itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType > elastix::NormalizedMutualInformationMetric< TElastix >::Superclass1

Definition at line 86 of file elxNormalizedMutualInformationMetric.h.

Superclass2

template<class TElastix >

typedef MetricBase< TElastix > elastix::NormalizedMutualInformationMetric< TElastix >::Superclass2

Definition at line 87 of file elxNormalizedMutualInformationMetric.h.

TransformJacobianType

template<class TElastix >

typedef Superclass1::TransformJacobianType elastix::NormalizedMutualInformationMetric< TElastix >::TransformJacobianType

Definition at line 118 of file elxNormalizedMutualInformationMetric.h.

TransformParametersType

template<class TElastix >

typedef Superclass1::TransformParametersType elastix::NormalizedMutualInformationMetric< TElastix >::TransformParametersType

Definition at line 117 of file elxNormalizedMutualInformationMetric.h.

TransformPointer

template<class TElastix >

typedef Superclass1::TransformPointer elastix::NormalizedMutualInformationMetric< TElastix >::TransformPointer

Definition at line 114 of file elxNormalizedMutualInformationMetric.h.

TransformType

template<class TElastix >

typedef Superclass1::TransformType elastix::NormalizedMutualInformationMetric< TElastix >::TransformType

Definition at line 113 of file elxNormalizedMutualInformationMetric.h.

Constructor & Destructor Documentation

NormalizedMutualInformationMetric() [1/2]

template<class TElastix >

elastix::NormalizedMutualInformationMetric< TElastix >::NormalizedMutualInformationMetric ( )

inlineprotected

The constructor.

Definition at line 181 of file elxNormalizedMutualInformationMetric.h.

~NormalizedMutualInformationMetric()

template<class TElastix >

elastix::NormalizedMutualInformationMetric< TElastix >::~NormalizedMutualInformationMetric ( )

inlineoverrideprotected

The destructor.

Definition at line 188 of file elxNormalizedMutualInformationMetric.h.

NormalizedMutualInformationMetric() [2/2]

template<class TElastix >

elastix::NormalizedMutualInformationMetric< TElastix >::NormalizedMutualInformationMetric ( const Self &  )

private

The private constructor.

Member Function Documentation

BeforeEachResolution()

template<class TElastix >

void elastix::NormalizedMutualInformationMetric< TElastix >::BeforeEachResolution ( void  )

overridevirtual

Execute stuff before each new pyramid resolution:

• Set the number of histogram bins.
• Set the CheckNumberOfSamples option.
• Set the fixed/moving LimitRangeRatio
• Set the fixed/moving limiter.

Reimplemented from elastix::BaseComponent.

elxClassNameMacro()

template<class TElastix >

elastix::NormalizedMutualInformationMetric< TElastix >::elxClassNameMacro

(

"NormalizedMutualInformation"

)

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "NormalizedMutualInformation")

GetClassName()

template<class TElastix >

virtual const char * elastix::NormalizedMutualInformationMetric< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

Initialize()

template<class TElastix >

void elastix::NormalizedMutualInformationMetric< TElastix >::Initialize ( void  )

override

Set up a timer to measure the initialization time and call the Superclass' implementation.

itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

New()

template<class TElastix >

static Pointer elastix::NormalizedMutualInformationMetric< TElastix >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TElastix >

void elastix::NormalizedMutualInformationMetric< TElastix >::operator= ( const Self &  )

private

The private copy constructor.