#include <elxMissingStructurePenalty.h>

Detailed Description

template<class TElastix>
class elastix::MissingStructurePenalty< TElastix >

Computes the (pseudo) volume of the transformed surface mesh of a structure.
A metric based on the itk::MissingStructurePenalty.

Author: F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands

Note: If you use the MissingStructurePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen, A.N.T.J. Kotte, A.A.C. de Leeuw, I.M. J�rgenliemk-Schulz,
M.A. Viergever and J.P.W. Pluim "Registration of structurally dissimilar \n images in MRI-based brachytherapy ", Phys. Med. Biol. 59 (2014) 4033-4045.
http://stacks.iop.org/0031-9155/59/4033 The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "MissingStructurePenalty")

(WriteResultMeshAfterEachIteration "True")

(WriteResultMeshAfterEachResolution "True") The command-line options for input meshes is: -fmesh<[A-Z]><MetricNumber>.

Definition at line 54 of file elxMissingStructurePenalty.h.

Inheritance diagram for elastix::MissingStructurePenalty< TElastix >:

Public Types
typedef Superclass1::CellInterfaceType	CellInterfaceType

typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) >	CombinationTransformType

typedef Superclass2::ConfigurationPointer	ConfigurationPointer

typedef Superclass2::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass1::CoordinateRepresentationType	CoordinateRepresentationType

typedef OutputPointType::CoordRepType	CoordRepType

typedef Superclass1::DerivativeType	DerivativeType

typedef Superclass2::ElastixPointer	ElastixPointer

typedef Superclass2::ElastixType	ElastixType

typedef Superclass1::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass1::FixedImageMaskType	FixedImageMaskType

typedef Superclass2::FixedImageType	FixedImageType

typedef Superclass1::FixedMeshConstPointer	FixedMeshConstPointer

typedef Superclass1::FixedMeshContainerPointer	FixedMeshContainerPointer

typedef Superclass1::FixedMeshContainerType	FixedMeshContainerType

typedef Superclass1::FixedMeshPointer	FixedMeshPointer

typedef Superclass1::FixedMeshType	FixedMeshType

typedef Superclass1::FixedPointSetConstPointer	FixedPointSetConstPointer

typedef Superclass1::FixedPointSetType	FixedPointSetType

typedef FixedImageType	ImageType

typedef CombinationTransformType::InitialTransformType	InitialTransformType

typedef Superclass1::InputPointType	InputPointType

typedef Superclass2::ITKBaseType	ITKBaseType

typedef Superclass1::MappedMeshContainerPointer	MappedMeshContainerPointer

typedef Superclass1::MappedMeshContainerType	MappedMeshContainerType

typedef Superclass1::MeasureType	MeasureType

typedef Superclass1::MeshIdType	MeshIdType

typedef FixedMeshType	MeshType

typedef Superclass1::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass1::MovingImageMaskType	MovingImageMaskType

typedef Superclass2::MovingImageType	MovingImageType

typedef Superclass1::MovingPointSetConstPointer	MovingPointSetConstPointer

typedef Superclass1::MovingPointSetType	MovingPointSetType

typedef itk::Object	ObjectType

typedef Superclass1::OutputPointType	OutputPointType

typedef Superclass1::ParametersType	ParametersType

typedef itk::SmartPointer< Self >	Pointer

typedef FixedPointSetType	PointSetType

typedef Superclass2::RegistrationPointer	RegistrationPointer

typedef Superclass2::RegistrationType	RegistrationType

typedef MissingStructurePenalty	Self

typedef itk::MissingVolumeMeshPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType >	Superclass1

typedef MetricBase< TElastix >	Superclass2

typedef Superclass1::TransformJacobianType	TransformJacobianType

typedef Superclass1::TransformParametersType	TransformParametersType

typedef Superclass1::TransformPointer	TransformPointer

typedef Superclass1::TransformType	TransformType

Public Types inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef MeshTraitsType::CellType	CellInterfaceType

typedef SmartPointer< const Self >	ConstPointer

typedef OutputPointType::CoordRepType	CoordRepType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef unsigned char	DummyMeshPixelType

typedef FixedMeshType::ConstPointer	FixedMeshConstPointer

typedef FixedMeshContainerType::ConstPointer	FixedMeshContainerConstPointer

typedef FixedMeshContainerType::ElementIdentifier	FixedMeshContainerElementIdentifier

typedef FixedMeshContainerType::Pointer	FixedMeshContainerPointer

typedef VectorContainer< MeshIdType, FixedMeshConstPointer >	FixedMeshContainerType

typedef FixedMeshType::Pointer	FixedMeshPointer

typedef FixedMeshType::PointIdentifier	FixedMeshPointIdentifier

typedef Mesh< DummyMeshPixelType, FixedPointSetDimension, MeshTraitsType >	FixedMeshType

typedef Superclass::InputPointType	InputPointType

typedef MappedMeshContainerType::ConstPointer	MappedMeshContainerConstPointer

typedef MappedMeshContainerType::Pointer	MappedMeshContainerPointer

typedef VectorContainer< MeshIdType, FixedMeshPointer >	MappedMeshContainerType

typedef Superclass::MeasureType	MeasureType

typedef unsigned int	MeshIdType

typedef FixedMeshType::PointDataContainerIterator	MeshPointDataContainerConstIteratorType

typedef FixedMeshType::PointDataContainerConstPointer	MeshPointDataContainerConstPointer

typedef MeshPointDataContainerType::Iterator	MeshPointDataContainerIteratorType

typedef FixedMeshType::PointDataContainerPointer	MeshPointDataContainerPointer

typedef FixedMeshType::PointDataContainer	MeshPointDataContainerType

typedef FixedMeshType::PointsContainerConstIterator	MeshPointsContainerConstIteratorType

typedef MeshPointsContainerType::ConstPointer	MeshPointsContainerConstPointer

typedef FixedMeshType::PointsContainerIterator	MeshPointsContainerIteratorType

typedef MeshPointsContainerType::Pointer	MeshPointsContainerPointer

typedef FixedMeshType::PointsContainer	MeshPointsContainerType

typedef Array< DerivativeValueType >	MeshPointsDerivativeValueType

typedef FixedMeshType::PointType	MeshPointType

typedef DefaultStaticMeshTraits< DummyMeshPixelType, FixedPointSetDimension, FixedPointSetDimension, CoordRepType >	MeshTraitsType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::OutputPointType	OutputPointType

typedef SmartPointer< Self >	Pointer

typedef MissingVolumeMeshPenalty	Self

typedef itk::Vector< typename VectorType::ValueType, FixedPointSetDimension - 1 >	SubVectorType

typedef SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >	Superclass

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

typedef VectorType::const_pointer	VectorConstPointer

typedef FixedMeshType::PointType::VectorType	VectorType

typedef vnl_vector< CoordRepType >	VnlVectorType

Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer

typedef FixedImageMaskType::Pointer	FixedImageMaskPointer

typedef SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) >	FixedImageMaskType

typedef FixedPointSetType::ConstPointer	FixedPointSetConstPointer

typedef FixedPointSetType::PixelType	FixedPointSetPixelType

typedef MetricBase< TElastix >::FixedPointSetType	FixedPointSetType

typedef TransformType::InputPointType	InputPointType

typedef Superclass::MeasureType	MeasureType

typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer

typedef MovingImageMaskType::Pointer	MovingImageMaskPointer

typedef SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) >	MovingImageMaskType

typedef MovingPointSetType::ConstPointer	MovingPointSetConstPointer

typedef MovingPointSetType::PixelType	MovingPointSetPixelType

typedef MetricBase< TElastix >::MovingPointSetType	MovingPointSetType

typedef TransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef TransformType::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef FixedPointSetType::PointDataContainer::ConstIterator	PointDataIterator

typedef SmartPointer< Self >	Pointer

typedef FixedPointSetType::PointsContainer::ConstIterator	PointIterator

typedef SingleValuedPointSetToPointSetMetric	Self

typedef SingleValuedCostFunction	Superclass

typedef TransformType::JacobianType	TransformJacobianType

typedef TransformType::ParametersType	TransformParametersType

typedef TransformType::Pointer	TransformPointer

typedef AdvancedTransform< CoordinateRepresentationType, itkGetStaticConstMacro(FixedPointSetDimension), itkGetStaticConstMacro(MovingPointSetDimension) >	TransformType

Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType >	AdvancedMetricType

typedef Superclass::ConfigurationPointer	ConfigurationPointer

typedef Superclass::ConfigurationType	ConfigurationType

typedef ITKBaseType::ParametersValueType	CoordinateRepresentationType

typedef Superclass::ElastixPointer	ElastixPointer

typedef Superclass::ElastixType	ElastixType

typedef ElastixType::FixedImageType	FixedImageType

typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	FixedPointSetType

typedef FixedImageType::PointType	FixedPointType

typedef FixedPointType::ValueType	FixedPointValueType

typedef AdvancedMetricType::ImageSamplerType	ImageSamplerBaseType

typedef itk::SingleValuedCostFunction	ITKBaseType

typedef ITKBaseType::MeasureType	MeasureType

typedef AdvancedMetricType::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef ElastixType::MovingImageType	MovingImageType

typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	MovingPointSetType

typedef MovingImageType::PointType	MovingPointType

typedef MovingPointType::ValueType	MovingPointValueType

typedef Superclass::RegistrationPointer	RegistrationPointer

typedef Superclass::RegistrationType	RegistrationType

typedef MetricBase	Self

typedef BaseComponentSE< TElastix >	Superclass

Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer

typedef Configuration	ConfigurationType

typedef itk::WeakPointer< ElastixType >	ElastixPointer

typedef TElastix	ElastixType

typedef RegistrationType *	RegistrationPointer

typedef ElastixType::RegistrationBaseType	RegistrationType

typedef BaseComponentSE	Self

typedef BaseComponent	Superclass

Public Member Functions
void	AfterEachIteration (void) override

void	AfterEachResolution (void) override

int	BeforeAllBase (void) override

void	BeforeRegistration (void) override

	elxClassNameMacro ("MissingStructurePenalty")

virtual const char *	GetClassName () const

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

unsigned int	ReadMesh (const std::string &meshFileName, typename FixedMeshType::Pointer &mesh)

unsigned int	ReadTransformixPoints (const std::string &filename, typename MeshType::Pointer &mesh)

void	SelectNewSamples (void) override

void	WriteResultMesh (const char *filename, MeshIdType meshId)

Public Member Functions inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual const char *	GetClassName () const

void	GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const override

virtual const FixedMeshContainerType *	GetFixedMeshContainer ()

MeasureType	GetValue (const TransformParametersType &parameters) const override

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override

void	Initialize (void) override

	itkGetModifiableObjectMacro (MappedMeshContainer, MappedMeshContainerType)

	itkStaticConstMacro (FixedPointSetDimension, unsigned int, Superclass::FixedPointSetDimension)

	itkStaticConstMacro (MovingPointSetDimension, unsigned int, Superclass::MovingPointSetDimension)

virtual void	SetFixedMeshContainer (const FixedMeshContainerType *_arg)

virtual void	SetMappedMeshContainer (MappedMeshContainerType *_arg)

Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const char *	GetClassName () const

virtual const FixedImageMaskType *	GetFixedImageMask ()

virtual const FixedPointSetType *	GetFixedPointSet ()

virtual const MovingImageMaskType *	GetMovingImageMask ()

virtual const MovingPointSetType *	GetMovingPointSet ()

unsigned int	GetNumberOfParameters (void) const override

virtual const TransformType *	GetTransform ()

virtual const bool &	GetUseMetricSingleThreaded ()

virtual void	Initialize (void)

	itkStaticConstMacro (FixedPointSetDimension, unsigned int, TFixedPointSet::PointDimension)

	itkStaticConstMacro (MovingPointSetDimension, unsigned int, TMovingPointSet::PointDimension)

virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)

virtual void	SetFixedPointSet (const FixedPointSetType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)

virtual void	SetMovingPointSet (const MovingPointSetType *_arg)

virtual void	SetTransform (TransformType *_arg)

void	SetTransformParameters (const ParametersType &parameters) const

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase (void) override

void	BeforeEachResolutionBase (void) override

virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler (void) const

virtual bool	GetAdvancedMetricUseImageSampler (void) const

virtual ITKBaseType *	GetAsITKBaseType (void)

virtual const ITKBaseType *	GetAsITKBaseType (void) const

virtual const char *	GetClassName () const

virtual MeasureType	GetCurrentExactMetricValue (void) const

virtual bool	GetShowExactMetricValue (void) const

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SelectNewSamples (void)

virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const

ElastixType *	GetElastix (void) const

RegistrationPointer	GetRegistration (void) const

	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)

void	SetConfiguration (ConfigurationType *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)

virtual void	AfterEachIterationBase (void)

virtual void	AfterEachResolution (void)

virtual void	AfterEachResolutionBase (void)

virtual void	AfterRegistration (void)

virtual void	AfterRegistrationBase (void)

virtual int	BeforeAll (void)

virtual int	BeforeAllBase (void)

virtual void	BeforeEachResolution (void)

virtual void	BeforeEachResolutionBase (void)

virtual void	BeforeRegistration (void)

virtual void	BeforeRegistrationBase (void)

virtual const char *	elxGetClassName (void) const

const char *	GetComponentLabel (void) const

	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	MissingStructurePenalty ()

	~MissingStructurePenalty () override

Protected Member Functions inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
	MissingVolumeMeshPenalty ()

	~MissingVolumeMeshPenalty () override

Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void	PrintSelf (std::ostream &os, Indent indent) const override

	SingleValuedPointSetToPointSetMetric ()

	~SingleValuedPointSetToPointSetMetric () override

Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)

	MetricBase ()

	~MetricBase () override

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Private Member Functions
	MissingStructurePenalty (const Self &)

void	operator= (const Self &)

Private Attributes
unsigned int	m_NumberOfMeshes

Additional Inherited Members
Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer	ExactMetricImageSamplerPointer

typedef itk::ImageGridSampler< FixedImageType >	ExactMetricImageSamplerType

typedef ExactMetricImageSamplerType::SampleGridSpacingType	ExactMetricSampleGridSpacingType

typedef ITKBaseType::ParametersType	ParametersType

Protected Attributes inherited from itk::MissingVolumeMeshPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedMeshConstPointer	m_FixedMesh

FixedMeshContainerConstPointer	m_FixedMeshContainer

MappedMeshContainerPointer	m_MappedMeshContainer

Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedImageMaskConstPointer	m_FixedImageMask

FixedPointSetConstPointer	m_FixedPointSet

MovingImageMaskConstPointer	m_MovingImageMask

MovingPointSetConstPointer	m_MovingPointSet

unsigned int	m_NumberOfPointsCounted

TransformPointer	m_Transform

bool	m_UseMetricSingleThreaded

Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue

unsigned int	m_ExactMetricEachXNumberOfIterations

ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing

ExactMetricImageSamplerPointer	m_ExactMetricSampler

bool	m_ShowExactMetricValue

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}

ElastixPointer	m_Elastix {}

RegistrationPointer	m_Registration {}

Member Typedef Documentation

◆ CellInterfaceType

template<class TElastix >

typedef Superclass1::CellInterfaceType elastix::MissingStructurePenalty< TElastix >::CellInterfaceType

Definition at line 99 of file elxMissingStructurePenalty.h.

◆ CombinationTransformType

template<class TElastix >

typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro( FixedImageDimension ) > elastix::MissingStructurePenalty< TElastix >::CombinationTransformType

Definition at line 124 of file elxMissingStructurePenalty.h.

◆ ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::MissingStructurePenalty< TElastix >::ConfigurationPointer

Definition at line 132 of file elxMissingStructurePenalty.h.

◆ ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::MissingStructurePenalty< TElastix >::ConfigurationType

Definition at line 131 of file elxMissingStructurePenalty.h.

◆ ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::MissingStructurePenalty< TElastix >::ConstPointer

Definition at line 70 of file elxMissingStructurePenalty.h.

◆ CoordinateRepresentationType

template<class TElastix >

typedef Superclass1::CoordinateRepresentationType elastix::MissingStructurePenalty< TElastix >::CoordinateRepresentationType

Definition at line 90 of file elxMissingStructurePenalty.h.

◆ CoordRepType

template<class TElastix >

typedef OutputPointType::CoordRepType elastix::MissingStructurePenalty< TElastix >::CoordRepType

Definition at line 117 of file elxMissingStructurePenalty.h.

◆ DerivativeType

template<class TElastix >

typedef Superclass1::DerivativeType elastix::MissingStructurePenalty< TElastix >::DerivativeType

Definition at line 114 of file elxMissingStructurePenalty.h.

◆ ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::MissingStructurePenalty< TElastix >::ElastixPointer

Definition at line 130 of file elxMissingStructurePenalty.h.

◆ ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::MissingStructurePenalty< TElastix >::ElastixType

Typedefs inherited from elastix.

Definition at line 129 of file elxMissingStructurePenalty.h.

◆ FixedImageMaskPointer

template<class TElastix >

typedef Superclass1::FixedImageMaskPointer elastix::MissingStructurePenalty< TElastix >::FixedImageMaskPointer

Definition at line 110 of file elxMissingStructurePenalty.h.

◆ FixedImageMaskType

template<class TElastix >

typedef Superclass1::FixedImageMaskType elastix::MissingStructurePenalty< TElastix >::FixedImageMaskType

Definition at line 109 of file elxMissingStructurePenalty.h.

◆ FixedImageType

template<class TElastix >

typedef Superclass2::FixedImageType elastix::MissingStructurePenalty< TElastix >::FixedImageType

Definition at line 136 of file elxMissingStructurePenalty.h.

◆ FixedMeshConstPointer

template<class TElastix >

typedef Superclass1::FixedMeshConstPointer elastix::MissingStructurePenalty< TElastix >::FixedMeshConstPointer

Definition at line 88 of file elxMissingStructurePenalty.h.

◆ FixedMeshContainerPointer

template<class TElastix >

typedef Superclass1::FixedMeshContainerPointer elastix::MissingStructurePenalty< TElastix >::FixedMeshContainerPointer

Definition at line 94 of file elxMissingStructurePenalty.h.

◆ FixedMeshContainerType

template<class TElastix >

typedef Superclass1::FixedMeshContainerType elastix::MissingStructurePenalty< TElastix >::FixedMeshContainerType

Definition at line 93 of file elxMissingStructurePenalty.h.

◆ FixedMeshPointer

template<class TElastix >

typedef Superclass1::FixedMeshPointer elastix::MissingStructurePenalty< TElastix >::FixedMeshPointer

Definition at line 87 of file elxMissingStructurePenalty.h.

◆ FixedMeshType

template<class TElastix >

typedef Superclass1::FixedMeshType elastix::MissingStructurePenalty< TElastix >::FixedMeshType

Typedefs from the superclass.

Definition at line 86 of file elxMissingStructurePenalty.h.

◆ FixedPointSetConstPointer

template<class TElastix >

typedef Superclass1::FixedPointSetConstPointer elastix::MissingStructurePenalty< TElastix >::FixedPointSetConstPointer

Definition at line 92 of file elxMissingStructurePenalty.h.

◆ FixedPointSetType

template<class TElastix >

typedef Superclass1::FixedPointSetType elastix::MissingStructurePenalty< TElastix >::FixedPointSetType

Definition at line 91 of file elxMissingStructurePenalty.h.

◆ ImageType

template<class TElastix >

typedef FixedImageType elastix::MissingStructurePenalty< TElastix >::ImageType

Definition at line 150 of file elxMissingStructurePenalty.h.

◆ InitialTransformType

template<class TElastix >

typedef CombinationTransformType::InitialTransformType elastix::MissingStructurePenalty< TElastix >::InitialTransformType

Definition at line 126 of file elxMissingStructurePenalty.h.

◆ InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::MissingStructurePenalty< TElastix >::InputPointType

Definition at line 104 of file elxMissingStructurePenalty.h.

◆ ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::MissingStructurePenalty< TElastix >::ITKBaseType

Definition at line 135 of file elxMissingStructurePenalty.h.

◆ MappedMeshContainerPointer

template<class TElastix >

typedef Superclass1::MappedMeshContainerPointer elastix::MissingStructurePenalty< TElastix >::MappedMeshContainerPointer

Definition at line 96 of file elxMissingStructurePenalty.h.

◆ MappedMeshContainerType

template<class TElastix >

typedef Superclass1::MappedMeshContainerType elastix::MissingStructurePenalty< TElastix >::MappedMeshContainerType

Definition at line 95 of file elxMissingStructurePenalty.h.

◆ MeasureType

template<class TElastix >

typedef Superclass1::MeasureType elastix::MissingStructurePenalty< TElastix >::MeasureType

Definition at line 113 of file elxMissingStructurePenalty.h.

◆ MeshIdType

template<class TElastix >

typedef Superclass1::MeshIdType elastix::MissingStructurePenalty< TElastix >::MeshIdType

Definition at line 119 of file elxMissingStructurePenalty.h.

◆ MeshType

template<class TElastix >

typedef FixedMeshType elastix::MissingStructurePenalty< TElastix >::MeshType

Definition at line 149 of file elxMissingStructurePenalty.h.

◆ MovingImageMaskPointer

template<class TElastix >

typedef Superclass1::MovingImageMaskPointer elastix::MissingStructurePenalty< TElastix >::MovingImageMaskPointer

Definition at line 112 of file elxMissingStructurePenalty.h.

◆ MovingImageMaskType

template<class TElastix >

typedef Superclass1::MovingImageMaskType elastix::MissingStructurePenalty< TElastix >::MovingImageMaskType

Definition at line 111 of file elxMissingStructurePenalty.h.

◆ MovingImageType

template<class TElastix >

typedef Superclass2::MovingImageType elastix::MissingStructurePenalty< TElastix >::MovingImageType

Definition at line 137 of file elxMissingStructurePenalty.h.

◆ MovingPointSetConstPointer

template<class TElastix >

typedef Superclass1::MovingPointSetConstPointer elastix::MissingStructurePenalty< TElastix >::MovingPointSetConstPointer

Definition at line 98 of file elxMissingStructurePenalty.h.

◆ MovingPointSetType

template<class TElastix >

typedef Superclass1::MovingPointSetType elastix::MissingStructurePenalty< TElastix >::MovingPointSetType

Definition at line 97 of file elxMissingStructurePenalty.h.

◆ ObjectType

template<class TElastix >

typedef itk::Object elastix::MissingStructurePenalty< TElastix >::ObjectType

Other typedef's.

Definition at line 121 of file elxMissingStructurePenalty.h.

◆ OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::MissingStructurePenalty< TElastix >::OutputPointType

Definition at line 105 of file elxMissingStructurePenalty.h.

◆ ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::MissingStructurePenalty< TElastix >::ParametersType

Definition at line 115 of file elxMissingStructurePenalty.h.

◆ Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::MissingStructurePenalty< TElastix >::Pointer

Definition at line 69 of file elxMissingStructurePenalty.h.

◆ PointSetType

template<class TElastix >

typedef FixedPointSetType elastix::MissingStructurePenalty< TElastix >::PointSetType

Assuming fixed and moving pointsets are of equal type, which implicitly assumes that the fixed and moving image are of the same type.

Definition at line 148 of file elxMissingStructurePenalty.h.

◆ RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::MissingStructurePenalty< TElastix >::RegistrationPointer

Definition at line 134 of file elxMissingStructurePenalty.h.

◆ RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::MissingStructurePenalty< TElastix >::RegistrationType

Definition at line 133 of file elxMissingStructurePenalty.h.

◆ Self

template<class TElastix >

typedef MissingStructurePenalty elastix::MissingStructurePenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 64 of file elxMissingStructurePenalty.h.

◆ Superclass1

template<class TElastix >

typedef itk::MissingVolumeMeshPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType > elastix::MissingStructurePenalty< TElastix >::Superclass1

Definition at line 67 of file elxMissingStructurePenalty.h.

◆ Superclass2

template<class TElastix >

typedef MetricBase< TElastix > elastix::MissingStructurePenalty< TElastix >::Superclass2

Definition at line 68 of file elxMissingStructurePenalty.h.

◆ TransformJacobianType

template<class TElastix >

typedef Superclass1::TransformJacobianType elastix::MissingStructurePenalty< TElastix >::TransformJacobianType

Definition at line 107 of file elxMissingStructurePenalty.h.

◆ TransformParametersType

template<class TElastix >

typedef Superclass1::TransformParametersType elastix::MissingStructurePenalty< TElastix >::TransformParametersType

Definition at line 106 of file elxMissingStructurePenalty.h.

◆ TransformPointer

template<class TElastix >

typedef Superclass1::TransformPointer elastix::MissingStructurePenalty< TElastix >::TransformPointer

Definition at line 103 of file elxMissingStructurePenalty.h.

◆ TransformType

template<class TElastix >

typedef Superclass1::TransformType elastix::MissingStructurePenalty< TElastix >::TransformType

Definition at line 102 of file elxMissingStructurePenalty.h.

Constructor & Destructor Documentation

◆ MissingStructurePenalty() [1/2]

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::MissingStructurePenalty ( )

protected

The constructor.

◆ ~MissingStructurePenalty()

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::~MissingStructurePenalty ( )

inlineoverrideprotected

The destructor.

Definition at line 186 of file elxMissingStructurePenalty.h.

◆ MissingStructurePenalty() [2/2]

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::MissingStructurePenalty ( const Self & )

private

The private constructor.

Member Function Documentation

◆ AfterEachIteration()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::AfterEachIteration ( void )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ AfterEachResolution()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::AfterEachResolution ( void )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ BeforeAllBase()

template<class TElastix >

int elastix::MissingStructurePenalty< TElastix >::BeforeAllBase ( void )

overridevirtual

Do some things before registration:

Load and set the pointsets.

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::BeforeRegistration ( void )

overridevirtual

Reimplemented from elastix::BaseComponent.

◆ elxClassNameMacro()

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::elxClassNameMacro ( "MissingStructurePenalty< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "MissingStructurePenalty")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::MissingStructurePenalty< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

◆ Initialize()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::Initialize ( void )

overridevirtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >.

◆ itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::MissingStructurePenalty< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

◆ New()

template<class TElastix >

static Pointer elastix::MissingStructurePenalty< TElastix >::New ( )

static

Method for creation through the object factory.

◆ operator=()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::operator= ( const Self & )

private

The private copy constructor.

◆ ReadMesh()

template<class TElastix >

unsigned int elastix::MissingStructurePenalty< TElastix >::ReadMesh	(	const std::string &	meshFileName,
		typename FixedMeshType::Pointer &	mesh
	)

Function to read the corresponding points.

◆ ReadTransformixPoints()

template<class TElastix >

unsigned int elastix::MissingStructurePenalty< TElastix >::ReadTransformixPoints	(	const std::string &	filename,
		typename MeshType::Pointer &	mesh
	)

◆ SelectNewSamples()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::SelectNewSamples ( void )

inlineoverridevirtual

Overwrite to silence warning.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 179 of file elxMissingStructurePenalty.h.

◆ WriteResultMesh()

template<class TElastix >

void elastix::MissingStructurePenalty< TElastix >::WriteResultMesh	(	const char *	filename,
		MeshIdType	meshId
	)

Field Documentation

◆ m_NumberOfMeshes

template<class TElastix >

unsigned int elastix::MissingStructurePenalty< TElastix >::m_NumberOfMeshes

private

Definition at line 195 of file elxMissingStructurePenalty.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ CellInterfaceType

◆ CombinationTransformType

◆ ConfigurationPointer

◆ ConfigurationType

◆ ConstPointer

◆ CoordinateRepresentationType

◆ CoordRepType

◆ DerivativeType

◆ ElastixPointer

◆ ElastixType

◆ FixedImageMaskPointer

◆ FixedImageMaskType

◆ FixedImageType

◆ FixedMeshConstPointer

◆ FixedMeshContainerPointer

◆ FixedMeshContainerType

◆ FixedMeshPointer

◆ FixedMeshType

◆ FixedPointSetConstPointer

◆ FixedPointSetType

◆ ImageType

◆ InitialTransformType

◆ InputPointType

◆ ITKBaseType

◆ MappedMeshContainerPointer

◆ MappedMeshContainerType

◆ MeasureType

◆ MeshIdType

◆ MeshType

◆ MovingImageMaskPointer

◆ MovingImageMaskType

◆ MovingImageType

◆ MovingPointSetConstPointer

◆ MovingPointSetType

◆ ObjectType

◆ OutputPointType

◆ ParametersType

◆ Pointer

◆ PointSetType

◆ RegistrationPointer

◆ RegistrationType

◆ Self

◆ Superclass1

◆ Superclass2

◆ TransformJacobianType

◆ TransformParametersType

◆ TransformPointer

◆ TransformType

Constructor & Destructor Documentation

◆ MissingStructurePenalty() [1/2]

◆ ~MissingStructurePenalty()

◆ MissingStructurePenalty() [2/2]

Member Function Documentation

◆ AfterEachIteration()

◆ AfterEachResolution()

◆ BeforeAllBase()

◆ BeforeRegistration()

◆ elxClassNameMacro()

◆ GetClassName()

◆ Initialize()

◆ itkStaticConstMacro() [1/2]

◆ itkStaticConstMacro() [2/2]

◆ New()

◆ operator=()

◆ ReadMesh()

◆ ReadTransformixPoints()

◆ SelectNewSamples()

◆ WriteResultMesh()

Field Documentation

◆ m_NumberOfMeshes