#include <elxEulerTransform.h>

Detailed Description

template<class TElastix>
class elastix::EulerTransformElastix< TElastix >

A transform based on the itk EulerTransforms.

This transform is a rigid body transformation.

The parameters used in this class are:

Transform: Select this transform as follows:
(Transform "EulerTransform")

Scales: the scale factor between the rotations and translations, used in the optimizer.
example: (Scales 200000.0)
example: (Scales 100000.0 60000.0 ... 80000.0)
If only one argument is given, that factor is used for the rotations. If more than one argument is given, then the number of arguments should be equal to the number of parameters: for each parameter its scale factor. If this parameter option is not used, by default the rotations are scaled by a factor of 100000.0. See also the AutomaticScalesEstimation parameter.

AutomaticScalesEstimation: if this parameter is set to "true" the Scales parameter is ignored and the scales are determined automatically.
example: ( AutomaticScalesEstimation "true" )
Default: "false" (for backwards compatibility). Recommended: "true".

CenterOfRotation: an index around which the image is rotated.
example: (CenterOfRotation 128 128 90)
By default the CenterOfRotation is set to the geometric center of the image.

AutomaticTransformInitialization: whether or not the initial translation between images should be estimated as the distance between their centers.
example: (AutomaticTransformInitialization "true")
By default "false" is assumed. So, no initial translation.

AutomaticTransformInitializationMethod: how to initialize this transform. Should be one of {GeometricalCenter, CenterOfGravity}.
example: (AutomaticTransformInitializationMethod "CenterOfGravity")
By default "GeometricalCenter" is assumed.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters:

CenterOfRotation: stores the center of rotation as an index.
example: (CenterOfRotation 128 128 90)
depecrated! From elastix version 3.402 this is changed to CenterOfRotationPoint!

CenterOfRotationPoint: stores the center of rotation, expressed in world coordinates.
example: (CenterOfRotationPoint 10.555 6.666 12.345)

Definition at line 74 of file elxEulerTransform.h.

Inheritance diagram for elastix::EulerTransformElastix< TElastix >:

Public Types
typedef Superclass2::CombinationTransformType	CombinationTransformType

typedef Superclass2::ConfigurationPointer	ConfigurationPointer

typedef Superclass2::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass2::CoordRepType	CoordRepType

typedef FixedImageType::DirectionType	DirectionType

typedef Superclass2::ElastixPointer	ElastixPointer

typedef Superclass2::ElastixType	ElastixType

typedef EulerTransformType::Pointer	EulerTransformPointer

typedef itk::EulerTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >	EulerTransformType

typedef Superclass2::FixedImageType	FixedImageType

typedef FixedImageType::IndexType	IndexType

typedef IndexType::IndexValueType	IndexValueType

typedef Superclass1::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass1::InputPointType	InputPointType

typedef Superclass1::InputVectorType	InputVectorType

typedef Superclass1::InputVnlVectorType	InputVnlVectorType

typedef Superclass2::ITKBaseType	ITKBaseType

typedef Superclass1::JacobianType	JacobianType

typedef Superclass2::MovingImageType	MovingImageType

typedef Superclass1::NumberOfParametersType	NumberOfParametersType

typedef EulerTransformType::OffsetType	OffsetType

typedef Superclass1::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass1::OutputPointType	OutputPointType

typedef Superclass1::OutputVectorType	OutputVectorType

typedef Superclass1::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass2::ParameterMapType	ParameterMapType

typedef Superclass1::ParametersType	ParametersType

typedef itk::SmartPointer< Self >	Pointer

typedef FixedImageType::PointType	PointType

typedef FixedImageType::RegionType	RegionType

typedef Superclass2::RegistrationPointer	RegistrationPointer

typedef Superclass2::RegistrationType	RegistrationType

typedef Superclass1::ScalarType	ScalarType

typedef Superclass2::ScalesType	ScalesType

typedef EulerTransformElastix	Self

typedef FixedImageType::SizeType	SizeType

typedef FixedImageType::SpacingType	SpacingType

typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >	Superclass1

typedef elx::TransformBase< TElastix >	Superclass2

typedef TransformInitializerType::Pointer	TransformInitializerPointer

typedef itk::CenteredTransformInitializer< EulerTransformType, FixedImageType, MovingImageType >	TransformInitializerType

Public Types inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
typedef SmartPointer< const Self >	ConstPointer

typedef CurrentTransformType::ConstPointer	CurrentTransformConstPointer

typedef CurrentTransformType::InverseTransformBasePointer	CurrentTransformInverseTransformBasePointer

typedef CurrentTransformType::InverseTransformBaseType	CurrentTransformInverseTransformBaseType

typedef CurrentTransformType::Pointer	CurrentTransformPointer

typedef Superclass	CurrentTransformType

typedef Superclass::DerivativeType	DerivativeType

typedef void(Self::*	EvaluateJacobianWithImageGradientProductFunctionPointer) (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

typedef Superclass::FixedParametersType	FixedParametersType

typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer) (const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialHessianFunctionPointer2) (const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer) (const InputPointType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetJacobianOfSpatialJacobianFunctionPointer2) (const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetSparseJacobianFunctionPointer) (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

typedef void(Self::*	GetSpatialHessianFunctionPointer) (const InputPointType &, SpatialHessianType &) const

typedef void(Self::*	GetSpatialJacobianFunctionPointer) (const InputPointType &, SpatialJacobianType &) const

typedef InitialTransformType::ConstPointer	InitialTransformConstPointer

typedef InitialTransformType::InverseTransformBasePointer	InitialTransformInverseTransformBasePointer

typedef InitialTransformType::InverseTransformBaseType	InitialTransformInverseTransformBaseType

typedef InitialTransformType::Pointer	InitialTransformPointer

typedef Superclass	InitialTransformType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef Superclass::InternalMatrixType	InternalMatrixType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::InverseTransformBaseType	InverseTransformBaseType

typedef Superclass::JacobianOfSpatialHessianType	JacobianOfSpatialHessianType

typedef Superclass::JacobianOfSpatialJacobianType	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef Superclass::MovingImageGradientType	MovingImageGradientType

typedef Superclass::MovingImageGradientValueType	MovingImageGradientValueType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::ScalarType	ScalarType

typedef AdvancedCombinationTransform	Self

typedef Superclass::SpatialHessianType	SpatialHessianType

typedef Superclass::SpatialJacobianType	SpatialJacobianType

typedef AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >	Superclass

typedef Superclass::TransformCategoryEnum	TransformCategoryEnum

typedef OutputPointType(Self::*	TransformPointFunctionPointer) (const InputPointType &) const

typedef Superclass::TransformType	TransformType

typedef TransformType::ConstPointer	TransformTypeConstPointer

typedef TransformType::Pointer	TransformTypePointer

Public Types inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::FixedParametersType	FixedParametersType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef SpatialJacobianType::InternalMatrixType	InternalMatrixType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::InverseTransformBaseType	InverseTransformBaseType

typedef std::vector< SpatialHessianType >	JacobianOfSpatialHessianType

typedef std::vector< SpatialJacobianType >	JacobianOfSpatialJacobianType

typedef Superclass::JacobianType	JacobianType

typedef OutputCovariantVectorType	MovingImageGradientType

typedef MovingImageGradientType::ValueType	MovingImageGradientValueType

typedef std::vector< unsigned long >	NonZeroJacobianIndicesType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef Superclass::ScalarType	ScalarType

typedef AdvancedTransform	Self

typedef FixedArray< Matrix< ScalarType, InputSpaceDimension, InputSpaceDimension >, OutputSpaceDimension >	SpatialHessianType

typedef Matrix< ScalarType, OutputSpaceDimension, InputSpaceDimension >	SpatialJacobianType

typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	Superclass

typedef Transform< elx::TransformBase< TElastix >::CoordRepType, NInputDimensions, NOutputDimensions >	TransformType

typedef TransformType::ConstPointer	TransformTypeConstPointer

typedef TransformType::Pointer	TransformTypePointer

Public Types inherited from elastix::TransformBase< TElastix >
typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) >	CombinationTransformType

typedef ConfigurationType::CommandLineArgumentMapType	CommandLineArgumentMapType

typedef ConfigurationType::CommandLineEntryType	CommandLineEntryType

typedef ComponentDatabase	ComponentDatabaseType

typedef ComponentDatabaseType::ComponentDescriptionType	ComponentDescriptionType

typedef Configuration::Pointer	ConfigurationPointer

typedef Configuration	ConfigurationType

typedef ElastixType::CoordRepType	CoordRepType

typedef itk::Image< VectorPixelType, FixedImageDimension >	DeformationFieldImageType

typedef itk::WeakPointer< ElastixType >	ElastixPointer

typedef TElastix	ElastixType

typedef ElastixType::FixedImageType	FixedImageType

typedef CombinationTransformType::InitialTransformType	InitialTransformType

typedef ITKBaseType::InputPointType	InputPointType

typedef itk::AdvancedTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension), itkGetStaticConstMacro(MovingImageDimension) >	ITKBaseType

typedef RegistrationType::ITKBaseType	ITKRegistrationType

typedef ElastixType::MovingImageType	MovingImageType

typedef itk::Object	ObjectType

typedef ITKRegistrationType::OptimizerType	OptimizerType

typedef ITKBaseType::OutputPointType	OutputPointType

typedef ElastixType::ParameterMapType	ParameterMapType

typedef ITKBaseType::ParametersType	ParametersType

typedef elx::ProgressCommand	ProgressCommandType

typedef ComponentDatabase::PtrToCreator	PtrToCreator

typedef RegistrationType *	RegistrationPointer

typedef ElastixType::RegistrationBaseType	RegistrationType

typedef OptimizerType::ScalesType	ScalesType

typedef TransformBase	Self

typedef BaseComponentSE< TElastix >	Superclass

typedef ParametersType::ValueType	ValueType

typedef itk::Vector< float, FixedImageDimension >	VectorPixelType

Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer

typedef Configuration	ConfigurationType

typedef itk::WeakPointer< ElastixType >	ElastixPointer

typedef TElastix	ElastixType

typedef RegistrationType *	RegistrationPointer

typedef ElastixType::RegistrationBaseType	RegistrationType

typedef BaseComponentSE	Self

typedef BaseComponent	Superclass

Public Member Functions
void	BeforeRegistration (void) override

void	CreateTransformParametersMap (const ParametersType &param, ParameterMapType *paramsMap) const override

	elxClassNameMacro ("EulerTransform")

virtual const char *	GetClassName () const

virtual void	InitializeTransform (void)

	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)

void	ReadFromFile (void) override

virtual void	SetScales (void)

void	WriteToFile (const ParametersType &param) const override

Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

virtual const char *	GetClassName () const

const FixedParametersType &	GetFixedParameters (void) const override

bool	GetHasNonZeroSpatialHessian (void) const override

virtual bool	GetInverse (Self *inverse) const

void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

virtual const TransformTypePointer	GetNthTransform (SizeValueType n) const

NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const override

NumberOfParametersType	GetNumberOfParameters (void) const override

virtual SizeValueType	GetNumberOfTransforms (void) const

const ParametersType &	GetParameters (void) const override

void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const override

void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const override

TransformCategoryEnum	GetTransformCategory () const override

virtual bool	GetUseAddition () const

virtual bool	GetUseComposition () const

virtual bool	HasNonZeroJacobianOfSpatialHessian (void) const

bool	IsLinear (void) const override

	itkGetModifiableObjectMacro (CurrentTransform, CurrentTransformType)

	itkGetModifiableObjectMacro (InitialTransform, InitialTransformType)

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

virtual void	SetCurrentTransform (CurrentTransformType *_arg)

void	SetFixedParameters (const FixedParametersType &fixedParam) override

virtual void	SetInitialTransform (InitialTransformType *_arg)

void	SetParameters (const ParametersType &param) override

void	SetParametersByValue (const ParametersType &param) override

virtual void	SetUseAddition (bool _arg)

virtual void	SetUseComposition (bool _arg)

OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override

OutputPointType	TransformPoint (const InputPointType &point) const override

OutputVectorType	TransformVector (const InputVectorType &) const override

OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override

Public Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override

virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &ipp, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual const char *	GetClassName () const

virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const

virtual bool	GetHasNonZeroSpatialHessian () const

virtual void	GetJacobian (const InputPointType &ipp, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual void	GetJacobianOfSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const=0

virtual NumberOfParametersType	GetNumberOfNonZeroJacobianIndices (void) const

virtual void	GetSpatialHessian (const InputPointType &ipp, SpatialHessianType &sh) const=0

virtual void	GetSpatialJacobian (const InputPointType &ipp, SpatialJacobianType &sj) const=0

	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)

	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Public Member Functions inherited from elastix::TransformBase< TElastix >
void	AfterRegistrationBase (void) override

int	BeforeAllBase (void) override

virtual int	BeforeAllTransformix (void)

void	BeforeRegistrationBase (void) override

virtual void	ComputeDeterminantOfSpatialJacobian (void) const

virtual void	ComputeSpatialJacobian (void) const

virtual void	CreateTransformParametersMap (const ParametersType &param, ParameterMapType *paramsMap) const

DeformationFieldImageType::Pointer	GenerateDeformationFieldImage (void) const

virtual CombinationTransformType *	GetAsCombinationTransform (void)

virtual const CombinationTransformType *	GetAsCombinationTransform (void) const

virtual ITKBaseType *	GetAsITKBaseType (void)

virtual const ITKBaseType *	GetAsITKBaseType (void) const

virtual const char *	GetClassName () const

virtual const InitialTransformType *	GetInitialTransform (void) const

virtual const char *	GetTransformParametersFileName () const

	ITK_DISALLOW_COPY_AND_ASSIGN (TransformBase)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	ReadFromFile (void)

virtual void	ReadInitialTransformFromFile (const char *transformParameterFileName)

virtual void	ReadInitialTransformFromVector (const vcl_size_t index)

virtual void	SetFinalParameters (void)

virtual void	SetInitialTransform (InitialTransformType *_arg)

virtual void	SetReadWriteTransformParameters (const bool _arg)

virtual void	SetTransformParametersFileName (const char *filename)

virtual void	TransformPoints (void) const

virtual void	TransformPointsAllPoints (void) const

virtual void	TransformPointsSomePoints (const std::string filename) const

virtual void	TransformPointsSomePointsVTK (const std::string filename) const

void	WriteDeformationFieldImage (typename DeformationFieldImageType::Pointer) const

virtual void	WriteToFile (const ParametersType &param) const

virtual void	WriteToFile (void) const

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const

ElastixType *	GetElastix (void) const

RegistrationPointer	GetRegistration (void) const

	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)

void	SetConfiguration (ConfigurationType *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)

virtual void	AfterEachIterationBase (void)

virtual void	AfterEachResolution (void)

virtual void	AfterEachResolutionBase (void)

virtual void	AfterRegistration (void)

virtual void	AfterRegistrationBase (void)

virtual int	BeforeAll (void)

virtual int	BeforeAllBase (void)

virtual void	BeforeEachResolution (void)

virtual void	BeforeEachResolutionBase (void)

virtual void	BeforeRegistration (void)

virtual void	BeforeRegistrationBase (void)

virtual const char *	elxGetClassName (void) const

const char *	GetComponentLabel (void) const

	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	EulerTransformElastix ()

virtual bool	ReadCenterOfRotationPoint (InputPointType &rotationPoint) const

	~EulerTransformElastix () override

Protected Member Functions inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
	AdvancedCombinationTransform ()

void	EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

virtual void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetSpatialHessianNoCurrentTransform (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianNoInitialTransform (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianUseAddition (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialHessianUseComposition (const InputPointType &ipp, SpatialHessianType &sh) const

void	GetSpatialJacobianNoCurrentTransform (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianNoInitialTransform (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseAddition (const InputPointType &ipp, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseComposition (const InputPointType &ipp, SpatialJacobianType &sj) const

virtual void	NoCurrentTransformSet (void) const

OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const

OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const

OutputPointType	TransformPointUseAddition (const InputPointType &point) const

OutputPointType	TransformPointUseComposition (const InputPointType &point) const

virtual void	UpdateCombinationMethod (void)

	~AdvancedCombinationTransform () override

Protected Member Functions inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
	AdvancedTransform ()

	AdvancedTransform (NumberOfParametersType numberOfParameters)

	~AdvancedTransform () override

Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const

void	AutomaticScalesEstimationStackTransform (const unsigned int &numSubTransforms, ScalesType &scales) const

	TransformBase ()=default

	~TransformBase () override=default

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Private Member Functions
	EulerTransformElastix (const Self &)

void	operator= (const Self &)

Private Attributes
EulerTransformPointer	m_EulerTransform

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >
CurrentTransformPointer	m_CurrentTransform

InitialTransformPointer	m_InitialTransform

EvaluateJacobianWithImageGradientProductFunctionPointer	m_SelectedEvaluateJacobianWithImageGradientProductFunction

GetJacobianOfSpatialHessianFunctionPointer	m_SelectedGetJacobianOfSpatialHessianFunction

GetJacobianOfSpatialHessianFunctionPointer2	m_SelectedGetJacobianOfSpatialHessianFunction2

GetJacobianOfSpatialJacobianFunctionPointer	m_SelectedGetJacobianOfSpatialJacobianFunction

GetJacobianOfSpatialJacobianFunctionPointer2	m_SelectedGetJacobianOfSpatialJacobianFunction2

GetSparseJacobianFunctionPointer	m_SelectedGetSparseJacobianFunction

GetSpatialHessianFunctionPointer	m_SelectedGetSpatialHessianFunction

GetSpatialJacobianFunctionPointer	m_SelectedGetSpatialJacobianFunction

TransformPointFunctionPointer	m_SelectedTransformPointFunction

bool	m_UseAddition

bool	m_UseComposition

Protected Attributes inherited from itk::AdvancedTransform< elx::TransformBase< TElastix >::CoordRepType, NDimensions, NDimensions >
bool	m_HasNonZeroJacobianOfSpatialHessian

bool	m_HasNonZeroSpatialHessian

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}

ElastixPointer	m_Elastix {}

RegistrationPointer	m_Registration {}

Member Typedef Documentation

◆ CombinationTransformType

template<class TElastix >

typedef Superclass2::CombinationTransformType elastix::EulerTransformElastix< TElastix >::CombinationTransformType

Definition at line 148 of file elxEulerTransform.h.

◆ ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::EulerTransformElastix< TElastix >::ConfigurationPointer

Definition at line 141 of file elxEulerTransform.h.

◆ ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::EulerTransformElastix< TElastix >::ConfigurationType

Definition at line 140 of file elxEulerTransform.h.

◆ ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::EulerTransformElastix< TElastix >::ConstPointer

Definition at line 98 of file elxEulerTransform.h.

◆ CoordRepType

template<class TElastix >

typedef Superclass2::CoordRepType elastix::EulerTransformElastix< TElastix >::CoordRepType

Definition at line 144 of file elxEulerTransform.h.

◆ DirectionType

template<class TElastix >

typedef FixedImageType::DirectionType elastix::EulerTransformElastix< TElastix >::DirectionType

Definition at line 157 of file elxEulerTransform.h.

◆ ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::EulerTransformElastix< TElastix >::ElastixPointer

Definition at line 138 of file elxEulerTransform.h.

◆ ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::EulerTransformElastix< TElastix >::ElastixType

Typedef's inherited from TransformBase.

Definition at line 137 of file elxEulerTransform.h.

◆ EulerTransformPointer

template<class TElastix >

typedef EulerTransformType::Pointer elastix::EulerTransformElastix< TElastix >::EulerTransformPointer

Definition at line 133 of file elxEulerTransform.h.

◆ EulerTransformType

template<class TElastix >

typedef itk::EulerTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::EulerTransformElastix< TElastix >::EulerTransformType

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform

Definition at line 95 of file elxEulerTransform.h.

◆ FixedImageType

template<class TElastix >

typedef Superclass2::FixedImageType elastix::EulerTransformElastix< TElastix >::FixedImageType

Definition at line 145 of file elxEulerTransform.h.

◆ IndexType

template<class TElastix >

typedef FixedImageType::IndexType elastix::EulerTransformElastix< TElastix >::IndexType

Other typedef's.

Definition at line 151 of file elxEulerTransform.h.

◆ IndexValueType

template<class TElastix >

typedef IndexType::IndexValueType elastix::EulerTransformElastix< TElastix >::IndexValueType

Definition at line 152 of file elxEulerTransform.h.

◆ InputCovariantVectorType

template<class TElastix >

typedef Superclass1::InputCovariantVectorType elastix::EulerTransformElastix< TElastix >::InputCovariantVectorType

Definition at line 128 of file elxEulerTransform.h.

◆ InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::EulerTransformElastix< TElastix >::InputPointType

Definition at line 124 of file elxEulerTransform.h.

◆ InputVectorType

template<class TElastix >

typedef Superclass1::InputVectorType elastix::EulerTransformElastix< TElastix >::InputVectorType

Definition at line 126 of file elxEulerTransform.h.

◆ InputVnlVectorType

template<class TElastix >

typedef Superclass1::InputVnlVectorType elastix::EulerTransformElastix< TElastix >::InputVnlVectorType

Definition at line 130 of file elxEulerTransform.h.

◆ ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::EulerTransformElastix< TElastix >::ITKBaseType

Definition at line 147 of file elxEulerTransform.h.

◆ JacobianType

template<class TElastix >

typedef Superclass1::JacobianType elastix::EulerTransformElastix< TElastix >::JacobianType

Definition at line 122 of file elxEulerTransform.h.

◆ MovingImageType

template<class TElastix >

typedef Superclass2::MovingImageType elastix::EulerTransformElastix< TElastix >::MovingImageType

Definition at line 146 of file elxEulerTransform.h.

◆ NumberOfParametersType

template<class TElastix >

typedef Superclass1::NumberOfParametersType elastix::EulerTransformElastix< TElastix >::NumberOfParametersType

Definition at line 121 of file elxEulerTransform.h.

◆ OffsetType

template<class TElastix >

typedef EulerTransformType::OffsetType elastix::EulerTransformElastix< TElastix >::OffsetType

Definition at line 134 of file elxEulerTransform.h.

◆ OutputCovariantVectorType

template<class TElastix >

typedef Superclass1::OutputCovariantVectorType elastix::EulerTransformElastix< TElastix >::OutputCovariantVectorType

Definition at line 129 of file elxEulerTransform.h.

◆ OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::EulerTransformElastix< TElastix >::OutputPointType

Definition at line 125 of file elxEulerTransform.h.

◆ OutputVectorType

template<class TElastix >

typedef Superclass1::OutputVectorType elastix::EulerTransformElastix< TElastix >::OutputVectorType

Definition at line 127 of file elxEulerTransform.h.

◆ OutputVnlVectorType

template<class TElastix >

typedef Superclass1::OutputVnlVectorType elastix::EulerTransformElastix< TElastix >::OutputVnlVectorType

Definition at line 131 of file elxEulerTransform.h.

◆ ParameterMapType

template<class TElastix >

typedef Superclass2::ParameterMapType elastix::EulerTransformElastix< TElastix >::ParameterMapType

Definition at line 139 of file elxEulerTransform.h.

◆ ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::EulerTransformElastix< TElastix >::ParametersType

Definition at line 120 of file elxEulerTransform.h.

◆ Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::EulerTransformElastix< TElastix >::Pointer

Definition at line 97 of file elxEulerTransform.h.

◆ PointType

template<class TElastix >

typedef FixedImageType::PointType elastix::EulerTransformElastix< TElastix >::PointType

Definition at line 154 of file elxEulerTransform.h.

◆ RegionType

template<class TElastix >

typedef FixedImageType::RegionType elastix::EulerTransformElastix< TElastix >::RegionType

Definition at line 156 of file elxEulerTransform.h.

◆ RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::EulerTransformElastix< TElastix >::RegistrationPointer

Definition at line 143 of file elxEulerTransform.h.

◆ RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::EulerTransformElastix< TElastix >::RegistrationType

Definition at line 142 of file elxEulerTransform.h.

◆ ScalarType

template<class TElastix >

typedef Superclass1::ScalarType elastix::EulerTransformElastix< TElastix >::ScalarType

Typedefs inherited from the superclass. These are both in Euler2D and Euler3D.

Definition at line 119 of file elxEulerTransform.h.

◆ ScalesType

template<class TElastix >

typedef Superclass2::ScalesType elastix::EulerTransformElastix< TElastix >::ScalesType

For scales setting in the optimizer

Definition at line 164 of file elxEulerTransform.h.

◆ Self

template<class TElastix >

typedef EulerTransformElastix elastix::EulerTransformElastix< TElastix >::Self

Standard ITK-stuff.

Definition at line 83 of file elxEulerTransform.h.

◆ SizeType

template<class TElastix >

typedef FixedImageType::SizeType elastix::EulerTransformElastix< TElastix >::SizeType

Definition at line 153 of file elxEulerTransform.h.

◆ SpacingType

template<class TElastix >

typedef FixedImageType::SpacingType elastix::EulerTransformElastix< TElastix >::SpacingType

Definition at line 155 of file elxEulerTransform.h.

◆ Superclass1

template<class TElastix >

typedef itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::EulerTransformElastix< TElastix >::Superclass1

Definition at line 87 of file elxEulerTransform.h.

◆ Superclass2

template<class TElastix >

typedef elx::TransformBase< TElastix > elastix::EulerTransformElastix< TElastix >::Superclass2

Definition at line 89 of file elxEulerTransform.h.

◆ TransformInitializerPointer

template<class TElastix >

typedef TransformInitializerType::Pointer elastix::EulerTransformElastix< TElastix >::TransformInitializerPointer

Definition at line 161 of file elxEulerTransform.h.

◆ TransformInitializerType

template<class TElastix >

typedef itk::CenteredTransformInitializer< EulerTransformType, FixedImageType, MovingImageType > elastix::EulerTransformElastix< TElastix >::TransformInitializerType

Definition at line 160 of file elxEulerTransform.h.

Constructor & Destructor Documentation

◆ EulerTransformElastix() [1/2]

template<class TElastix >

elastix::EulerTransformElastix< TElastix >::EulerTransformElastix ( )

protected

The constructor.

◆ ~EulerTransformElastix()

template<class TElastix >

elastix::EulerTransformElastix< TElastix >::~EulerTransformElastix ( )

inlineoverrideprotected

The destructor.

Definition at line 220 of file elxEulerTransform.h.

◆ EulerTransformElastix() [2/2]

template<class TElastix >

elastix::EulerTransformElastix< TElastix >::EulerTransformElastix ( const Self & )

private

The private constructor.

Member Function Documentation

◆ BeforeRegistration()

template<class TElastix >

void elastix::EulerTransformElastix< TElastix >::BeforeRegistration ( void )

overridevirtual

Execute stuff before the actual registration:

Call InitializeTransform
Set the scales.

Reimplemented from elastix::BaseComponent.

◆ CreateTransformParametersMap()

template<class TElastix >

void elastix::EulerTransformElastix< TElastix >::CreateTransformParametersMap	(	const ParametersType &	param,
		ParameterMapType *	paramsMap
	)		const

overridevirtual

Function to create transform-parameters map. Creates the TransformParametersmap

Reimplemented from elastix::TransformBase< TElastix >.

◆ elxClassNameMacro()

template<class TElastix >

elastix::EulerTransformElastix< TElastix >::elxClassNameMacro ( "EulerTransform" )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "EulerTransform")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::EulerTransformElastix< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::TransformBase< TElastix >.

◆ InitializeTransform()

template<class TElastix >

virtual void elastix::EulerTransformElastix< TElastix >::InitializeTransform ( void )

virtual

Initialize Transform.

Set all parameters to zero.
Set center of rotation: automatically initialized to the geometric center of the image, or assigned a user entered voxel index, given by the parameter (CenterOfRotation <index-x> <index-y> ...); If an initial transform is present and HowToCombineTransforms is set to "Compose", the initial transform is taken into account while setting the center of rotation.
Set initial translation: the initial translation between fixed and moving image is guessed, if the user has set (AutomaticTransformInitialization "true").

It is not yet possible to enter an initial rotation angle.

◆ itkStaticConstMacro()

template<class TElastix >

elastix::EulerTransformElastix< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension
	)

Dimension of the fixed image.

◆ New()

template<class TElastix >

static Pointer elastix::EulerTransformElastix< TElastix >::New ( )

static

Method for creation through the object factory.

◆ operator=()

template<class TElastix >

void elastix::EulerTransformElastix< TElastix >::operator= ( const Self & )

private

The private copy constructor.

◆ ReadCenterOfRotationPoint()

template<class TElastix >

virtual bool elastix::EulerTransformElastix< TElastix >::ReadCenterOfRotationPoint ( InputPointType & rotationPoint ) const

protectedvirtual

Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates. Transform parameter files generated by elastix version > 3.402 save the center of rotation in this way.

◆ ReadFromFile()

template<class TElastix >

void elastix::EulerTransformElastix< TElastix >::ReadFromFile ( void )

overridevirtual

Function to read transform-parameters from a file.

It reads the center of rotation and calls the superclass' implementation.

Reimplemented from elastix::TransformBase< TElastix >.

◆ SetScales()

template<class TElastix >

virtual void elastix::EulerTransformElastix< TElastix >::SetScales ( void )

virtual

Set the scales

If AutomaticScalesEstimation is "true" estimate scales
If scales are provided by the user use those,
Otherwise use some default value This function is called by BeforeRegistration, after the InitializeTransform function is called

◆ WriteToFile()

template<class TElastix >

void elastix::EulerTransformElastix< TElastix >::WriteToFile ( const ParametersType & param ) const

overridevirtual

Function to write transform-parameters to a file. It writes the center of rotation to file and calls the superclass' implementation.

Reimplemented from elastix::TransformBase< TElastix >.

Field Documentation

◆ m_EulerTransform

template<class TElastix >

EulerTransformPointer elastix::EulerTransformElastix< TElastix >::m_EulerTransform

private

Definition at line 236 of file elxEulerTransform.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ CombinationTransformType

◆ ConfigurationPointer

◆ ConfigurationType

◆ ConstPointer

◆ CoordRepType

◆ DirectionType

◆ ElastixPointer

◆ ElastixType

◆ EulerTransformPointer

◆ EulerTransformType

◆ FixedImageType

◆ IndexType

◆ IndexValueType

◆ InputCovariantVectorType

◆ InputPointType

◆ InputVectorType

◆ InputVnlVectorType

◆ ITKBaseType

◆ JacobianType

◆ MovingImageType

◆ NumberOfParametersType

◆ OffsetType

◆ OutputCovariantVectorType

◆ OutputPointType

◆ OutputVectorType

◆ OutputVnlVectorType

◆ ParameterMapType

◆ ParametersType

◆ Pointer

◆ PointType

◆ RegionType

◆ RegistrationPointer

◆ RegistrationType

◆ ScalarType

◆ ScalesType

◆ Self

◆ SizeType

◆ SpacingType

◆ Superclass1

◆ Superclass2

◆ TransformInitializerPointer

◆ TransformInitializerType

Constructor & Destructor Documentation

◆ EulerTransformElastix() [1/2]

◆ ~EulerTransformElastix()

◆ EulerTransformElastix() [2/2]

Member Function Documentation

◆ BeforeRegistration()

◆ CreateTransformParametersMap()

◆ elxClassNameMacro()

◆ GetClassName()

◆ InitializeTransform()

◆ itkStaticConstMacro()

◆ New()

◆ operator=()

◆ ReadCenterOfRotationPoint()

◆ ReadFromFile()

◆ SetScales()

◆ WriteToFile()

Field Documentation

◆ m_EulerTransform