elastix::AdvancedMeanSquaresMetric< TElastix > Class Template Reference

#include <elxAdvancedMeanSquaresMetric.h>

Detailed Description

template<class TElastix>
class elastix::AdvancedMeanSquaresMetric< TElastix >

An metric based on the itk::AdvancedMeanSquaresImageToImageMetric.

The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "AdvancedMeanSquares")

UseNormalization: Bool to use normalization or not.
If true, the MeanSquares is divided by a factor (range/10)^2, where range represents the maximum gray value range of the images.
(UseNormalization "true")
The default value is false.

Definition at line 45 of file elxAdvancedMeanSquaresMetric.h.

Inheritance diagram for elastix::AdvancedMeanSquaresMetric< TElastix >:

Public Types
typedef Superclass2::ConfigurationPointer	ConfigurationPointer
typedef Superclass2::ConfigurationType	ConfigurationType
typedef itk::SmartPointer< const Self >	ConstPointer
typedef Superclass1::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass1::DerivativeType	DerivativeType
typedef Superclass2::ElastixPointer	ElastixPointer
typedef Superclass2::ElastixType	ElastixType
typedef Superclass1::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass1::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass1::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass1::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass1::FixedImageMaskType	FixedImageMaskType
typedef Superclass1::FixedImagePixelType	FixedImagePixelType
typedef Superclass1::FixedImageRegionType	FixedImageRegionType
typedef Superclass1::FixedImageType	FixedImageType
typedef Superclass1::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass1::GradientImageFilterType	GradientImageFilterType
typedef Superclass1::GradientImagePointer	GradientImagePointer
typedef Superclass1::GradientImageType	GradientImageType
typedef Superclass1::GradientPixelType	GradientPixelType
typedef Superclass1::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass1::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass1::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass1::ImageSamplerType	ImageSamplerType
typedef Superclass1::InputPointType	InputPointType
typedef Superclass1::InterpolatorPointer	InterpolatorPointer
typedef Superclass1::InterpolatorType	InterpolatorType
typedef Superclass2::ITKBaseType	ITKBaseType
typedef Superclass1::MeasureType	MeasureType
typedef Superclass1::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass1::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef Superclass1::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass1::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass1::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass1::MovingImageMaskType	MovingImageMaskType
typedef Superclass1::MovingImagePixelType	MovingImagePixelType
typedef Superclass1::MovingImageRegionType	MovingImageRegionType
typedef Superclass1::MovingImageType	MovingImageType
typedef Superclass1::OutputPointType	OutputPointType
typedef Superclass1::ParametersType	ParametersType
typedef itk::SmartPointer< Self >	Pointer
typedef Superclass1::RealType	RealType
typedef Superclass2::RegistrationPointer	RegistrationPointer
typedef Superclass2::RegistrationType	RegistrationType
typedef AdvancedMeanSquaresMetric	Self
typedef itk::AdvancedMeanSquaresImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >	Superclass1
typedef MetricBase< TElastix >	Superclass2
typedef Superclass1::TransformJacobianType	TransformJacobianType
typedef Superclass1::TransformParametersType	TransformParametersType
typedef Superclass1::TransformPointer	TransformPointer
typedef Superclass1::TransformType	TransformType
Public Types inherited from itk::AdvancedMeanSquaresImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::DerivativeValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType
typedef Superclass::FixedImageLimiterType	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef Superclass::FixedImageMaskSpatialObject2Type	FixedImageMaskSpatialObject2Type
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef Superclass::FixedImagePixelType	FixedImagePixelType
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::HessianType	HessianType
typedef Superclass::HessianValueType	HessianValueType
typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer
typedef Superclass::ImageSampleContainerType	ImageSampleContainerType
typedef Superclass::ImageSamplerPointer	ImageSamplerPointer
typedef Superclass::ImageSamplerType	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType
typedef Superclass::MovingImageLimiterType	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef Superclass::MovingImageMaskSpatialObject2Type	MovingImageMaskSpatialObject2Type
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef Superclass::MovingImageRegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef Superclass::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef AdvancedMeanSquaresImageToImageMetric	Self
typedef AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass
typedef Superclass::ThreaderType	ThreaderType
typedef Superclass::ThreadInfoType	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType
typedef BSplineOrder1TransformType::Pointer	BSplineOrder1TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType
typedef BSplineOrder2TransformType::Pointer	BSplineOrder2TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType
typedef BSplineOrder3TransformType::Pointer	BSplineOrder3TransformPointer
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension >	CombinationTransformType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef DerivativeType::ValueType	DerivativeValueType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType
typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer
typedef LimiterFunctionBase< RealType, FixedImageDimension >	FixedImageLimiterType
typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskSpatialObject2Type
typedef Superclass::FixedImageMaskType	FixedImageMaskType
typedef FixedImageType::PixelType	FixedImagePixelType
typedef FixedImageType::Pointer	FixedImagePointer
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer
typedef Superclass::GradientImageFilterType	GradientImageFilterType
typedef Superclass::GradientImagePointer	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef vnl_sparse_matrix< HessianValueType >	HessianType
typedef DerivativeType::ValueType	HessianValueType
typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer
typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType
typedef ImageSamplerType::Pointer	ImageSamplerPointer
typedef ImageSamplerBase< FixedImageType >	ImageSamplerType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InterpolatorPointer	InterpolatorPointer
typedef Superclass::InterpolatorType	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType
typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType
typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer
typedef LimiterFunctionBase< RealType, MovingImageDimension >	MovingImageLimiterType
typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer
typedef ImageMaskSpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskSpatialObject2Type
typedef Superclass::MovingImageMaskType	MovingImageMaskType
typedef Superclass::MovingImagePixelType	MovingImagePixelType
typedef MovingImageType::Pointer	MovingImagePointer
typedef MovingImageType::RegionType	MovingImageRegionType
typedef Superclass::MovingImageType	MovingImageType
typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef TransformType::ScalarType	ScalarType
typedef AdvancedImageToImageMetric	Self
typedef ImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass
typedef itk::PlatformMultiThreader	ThreaderType
typedef ThreaderType::WorkUnitInfo	ThreadInfoType
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType
Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType >	AdvancedMetricType
typedef Superclass::ConfigurationPointer	ConfigurationPointer
typedef Superclass::ConfigurationType	ConfigurationType
typedef ITKBaseType::ParametersValueType	CoordinateRepresentationType
typedef Superclass::ElastixPointer	ElastixPointer
typedef Superclass::ElastixType	ElastixType
typedef ElastixType::FixedImageType	FixedImageType
typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	FixedPointSetType
typedef FixedImageType::PointType	FixedPointType
typedef FixedPointType::ValueType	FixedPointValueType
typedef AdvancedMetricType::ImageSamplerType	ImageSamplerBaseType
typedef itk::SingleValuedCostFunction	ITKBaseType
typedef ITKBaseType::MeasureType	MeasureType
typedef AdvancedMetricType::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType
typedef ElastixType::MovingImageType	MovingImageType
typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	MovingPointSetType
typedef MovingImageType::PointType	MovingPointType
typedef MovingPointType::ValueType	MovingPointValueType
typedef Superclass::RegistrationPointer	RegistrationPointer
typedef Superclass::RegistrationType	RegistrationType
typedef MetricBase	Self
typedef BaseComponentSE< TElastix >	Superclass
Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer
typedef Configuration	ConfigurationType
typedef itk::WeakPointer< ElastixType >	ElastixPointer
typedef TElastix	ElastixType
typedef RegistrationType *	RegistrationPointer
typedef ElastixType::RegistrationBaseType	RegistrationType
typedef BaseComponentSE	Self
typedef BaseComponent	Superclass

Public Member Functions
void	BeforeEachResolution (void) override
	elxClassNameMacro ("AdvancedMeanSquares")
virtual const char *	GetClassName () const
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
Public Member Functions inherited from itk::AdvancedMeanSquaresImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const char *	GetClassName () const
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override
virtual unsigned int	GetNumberOfSamplesForSelfHessian () const
void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const override
virtual double	GetSelfHessianNoiseRange () const
virtual double	GetSelfHessianSmoothingSigma () const
virtual bool	GetUseNormalization () const
MeasureType	GetValue (const TransformParametersType &parameters) const override
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override
void	GetValueAndDerivativeSingleThreaded (const TransformParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
virtual MeasureType	GetValueSingleThreaded (const TransformParametersType &parameters) const
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SetNumberOfSamplesForSelfHessian (unsigned int _arg)
virtual void	SetSelfHessianNoiseRange (double _arg)
virtual void	SetSelfHessianSmoothingSigma (double _arg)
virtual void	SetUseNormalization (bool _arg)
virtual void	SetUseOpenMP (bool _arg)
Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const char *	GetClassName () const
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()
virtual double	GetFixedLimitRangeRatio () const
virtual ImageSamplerType *	GetImageSampler (void) const
virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()
virtual const MovingImageLimiterType *	GetMovingImageLimiter ()
virtual double	GetMovingLimitRangeRatio () const
virtual double	GetRequiredRatioOfValidSamples () const
virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const
virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
const AdvancedTransformType *	GetTransform (void) const override
virtual bool	GetUseFixedImageLimiter () const
virtual bool	GetUseImageSampler () const
virtual const bool &	GetUseMetricSingleThreaded ()
virtual bool	GetUseMovingImageDerivativeScales () const
virtual bool	GetUseMovingImageLimiter () const
virtual const bool &	GetUseMultiThread ()
void	Initialize (void) override
	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void	SetFixedLimitRangeRatio (double _arg)
virtual void	SetImageSampler (ImageSamplerType *_arg)
virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void	SetMovingLimitRangeRatio (double _arg)
virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
virtual void	SetRequiredRatioOfValidSamples (double _arg)
virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
virtual void	SetTransform (AdvancedTransformType *arg)
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	SetUseMovingImageDerivativeScales (bool _arg)
virtual void	SetUseMultiThread (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
virtual void	UseMultiThreadOff ()
virtual void	UseMultiThreadOn ()
Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase (void) override
void	BeforeEachResolutionBase (void) override
virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler (void) const
virtual bool	GetAdvancedMetricUseImageSampler (void) const
virtual ITKBaseType *	GetAsITKBaseType (void)
virtual const ITKBaseType *	GetAsITKBaseType (void) const
virtual const char *	GetClassName () const
virtual MeasureType	GetCurrentExactMetricValue (void) const
virtual bool	GetShowExactMetricValue (void) const
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void	SelectNewSamples (void)
virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const
ElastixType *	GetElastix (void) const
RegistrationPointer	GetRegistration (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)
void	SetConfiguration (ConfigurationType *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)
virtual void	AfterEachIterationBase (void)
virtual void	AfterEachResolution (void)
virtual void	AfterEachResolutionBase (void)
virtual void	AfterRegistration (void)
virtual void	AfterRegistrationBase (void)
virtual int	BeforeAll (void)
virtual int	BeforeAllBase (void)
virtual void	BeforeEachResolution (void)
virtual void	BeforeEachResolutionBase (void)
virtual void	BeforeRegistration (void)
virtual void	BeforeRegistrationBase (void)
virtual const char *	elxGetClassName (void) const
const char *	GetComponentLabel (void) const
	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::AdvancedMeanSquaresImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static Pointer	New ()
Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()

Protected Member Functions
	AdvancedMeanSquaresMetric ()
	~AdvancedMeanSquaresMetric () override
Protected Member Functions inherited from itk::AdvancedMeanSquaresImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
	AdvancedMeanSquaresImageToImageMetric ()
void	AfterThreadedGetValue (MeasureType &value) const override
void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const override
void	PrintSelf (std::ostream &os, Indent indent) const override
void	ThreadedGetValue (ThreadIdType threadID) override
void	ThreadedGetValueAndDerivative (ThreadIdType threadID) override
void	UpdateSelfHessianTerms (const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji, HessianType &H) const
void	UpdateValueAndDerivativeTerms (const RealType fixedImageValue, const RealType movingImageValue, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji, MeasureType &measure, DerivativeType &deriv) const
	~AdvancedMeanSquaresImageToImageMetric () override
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
	AdvancedImageToImageMetric ()
virtual void	AfterThreadedGetValue (MeasureType &value) const
virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
virtual void	CheckForAdvancedTransform (void)
virtual void	CheckForBSplineInterpolator (void)
virtual void	CheckForBSplineTransform (void) const
virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
virtual void	InitializeImageSampler (void)
virtual void	InitializeLimiters (void)
virtual void	InitializeThreadingParameters (void) const
virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)
void	LaunchGetValueAndDerivativeThreaderCallback (void) const
void	LaunchGetValueThreaderCallback (void) const
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetUseFixedImageLimiter (bool _arg)
virtual void	SetUseImageSampler (bool _arg)
virtual void	SetUseMovingImageLimiter (bool _arg)
virtual void	ThreadedGetValue (ThreadIdType threadID)
virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)
virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
	~AdvancedImageToImageMetric () override
Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)
	MetricBase ()
	~MetricBase () override
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Member Functions
	AdvancedMeanSquaresMetric (const Self &)
void	operator= (const Self &)

Additional Inherited Members
Protected Types inherited from itk::AdvancedMeanSquaresImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType
typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType
typedef NearestNeighborInterpolateImageFunction< FixedImageType, CoordinateRepresentationType >	DummyFixedImageInterpolatorType
typedef Superclass::FixedImageIndexType	FixedImageIndexType
typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType
typedef BSplineInterpolateImageFunction< FixedImageType, CoordinateRepresentationType >	FixedImageInterpolatorType
typedef Superclass::FixedImagePointType	FixedImagePointType
typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType
typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType
typedef Superclass::MovingImageIndexType	MovingImageIndexType
typedef Superclass::MovingImagePointType	MovingImagePointType
typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef ImageGridSampler< FixedImageType >	SelfHessianSamplerType
typedef SmoothingRecursiveGaussianImageFilter< FixedImageType, FixedImageType >	SmootherType
Protected Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType
typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType
typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer
typedef GradientImageFilter< MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType
typedef FixedImageType::IndexType	FixedImageIndexType
typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType
typedef TransformType::InputPointType	FixedImagePointType
typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer
typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType
typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType
typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType
typedef MovingImageType::IndexType	MovingImageIndexType
typedef TransformType::OutputPointType	MovingImagePointType
typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType
typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer
typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType
Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer	ExactMetricImageSamplerPointer
typedef itk::ImageGridSampler< FixedImageType >	ExactMetricImageSamplerType
typedef ExactMetricImageSamplerType::SampleGridSpacingType	ExactMetricSampleGridSpacingType
typedef ITKBaseType::ParametersType	ParametersType
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)
Protected Attributes inherited from itk::AdvancedMeanSquaresImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
double	m_NormalizationFactor
Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
AdvancedTransformType::Pointer	m_AdvancedTransform
BSplineInterpolatorPointer	m_BSplineInterpolator
BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat
CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter
FixedImageLimiterPointer	m_FixedImageLimiter
FixedImageLimiterOutputType	m_FixedImageMaxLimit
FixedImageLimiterOutputType	m_FixedImageMinLimit
FixedImagePixelType	m_FixedImageTrueMax
FixedImagePixelType	m_FixedImageTrueMin
double	m_FixedLimitRangeRatio
AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables
ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize
AlignedGetValuePerThreadStruct *	m_GetValuePerThreadVariables
ThreadIdType	m_GetValuePerThreadVariablesSize
ImageSamplerPointer	m_ImageSampler
bool	m_InterpolatorIsBSpline
bool	m_InterpolatorIsBSplineFloat
bool	m_InterpolatorIsLinear
bool	m_InterpolatorIsReducedBSpline
LinearInterpolatorPointer	m_LinearInterpolator
MovingImageLimiterPointer	m_MovingImageLimiter
MovingImageLimiterOutputType	m_MovingImageMaxLimit
MovingImageLimiterOutputType	m_MovingImageMinLimit
MovingImagePixelType	m_MovingImageTrueMax
MovingImagePixelType	m_MovingImageTrueMin
double	m_MovingLimitRangeRatio
ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator
MultiThreaderParameterType	m_ThreaderMetricParameters
bool	m_TransformIsAdvanced
bool	m_TransformIsBSpline
bool	m_UseMetricSingleThreaded
bool	m_UseMultiThread
bool	m_UseOpenMP
Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue
unsigned int	m_ExactMetricEachXNumberOfIterations
ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing
ExactMetricImageSamplerPointer	m_ExactMetricSampler
bool	m_ShowExactMetricValue
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}
ElastixPointer	m_Elastix {}
RegistrationPointer	m_Registration {}

Member Typedef Documentation

ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::AdvancedMeanSquaresMetric< TElastix >::ConfigurationPointer

Definition at line 133 of file elxAdvancedMeanSquaresMetric.h.

ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::AdvancedMeanSquaresMetric< TElastix >::ConfigurationType

Definition at line 132 of file elxAdvancedMeanSquaresMetric.h.

ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::AdvancedMeanSquaresMetric< TElastix >::ConstPointer

Definition at line 61 of file elxAdvancedMeanSquaresMetric.h.

CoordinateRepresentationType

template<class TElastix >

typedef Superclass1::CoordinateRepresentationType elastix::AdvancedMeanSquaresMetric< TElastix >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 77 of file elxAdvancedMeanSquaresMetric.h.

DerivativeType

template<class TElastix >

typedef Superclass1::DerivativeType elastix::AdvancedMeanSquaresMetric< TElastix >::DerivativeType

Definition at line 103 of file elxAdvancedMeanSquaresMetric.h.

ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::AdvancedMeanSquaresMetric< TElastix >::ElastixPointer

Definition at line 131 of file elxAdvancedMeanSquaresMetric.h.

ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::AdvancedMeanSquaresMetric< TElastix >::ElastixType

Typedef's inherited from Elastix.

Definition at line 130 of file elxAdvancedMeanSquaresMetric.h.

FixedImageConstPointer

template<class TElastix >

typedef Superclass1::FixedImageConstPointer elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImageConstPointer

Definition at line 82 of file elxAdvancedMeanSquaresMetric.h.

FixedImageLimiterOutputType

template<class TElastix >

typedef Superclass1::FixedImageLimiterOutputType elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImageLimiterOutputType

Definition at line 115 of file elxAdvancedMeanSquaresMetric.h.

FixedImageLimiterType

template<class TElastix >

typedef Superclass1::FixedImageLimiterType elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImageLimiterType

Definition at line 112 of file elxAdvancedMeanSquaresMetric.h.

FixedImageMaskPointer

template<class TElastix >

typedef Superclass1::FixedImageMaskPointer elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImageMaskPointer

Definition at line 99 of file elxAdvancedMeanSquaresMetric.h.

FixedImageMaskType

template<class TElastix >

typedef Superclass1::FixedImageMaskType elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImageMaskType

Definition at line 98 of file elxAdvancedMeanSquaresMetric.h.

FixedImagePixelType

template<class TElastix >

typedef Superclass1::FixedImagePixelType elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImagePixelType

Definition at line 105 of file elxAdvancedMeanSquaresMetric.h.

FixedImageRegionType

template<class TElastix >

typedef Superclass1::FixedImageRegionType elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImageRegionType

Definition at line 83 of file elxAdvancedMeanSquaresMetric.h.

FixedImageType

template<class TElastix >

typedef Superclass1::FixedImageType elastix::AdvancedMeanSquaresMetric< TElastix >::FixedImageType

Definition at line 81 of file elxAdvancedMeanSquaresMetric.h.

GradientImageFilterPointer

template<class TElastix >

typedef Superclass1::GradientImageFilterPointer elastix::AdvancedMeanSquaresMetric< TElastix >::GradientImageFilterPointer

Definition at line 97 of file elxAdvancedMeanSquaresMetric.h.

GradientImageFilterType

template<class TElastix >

typedef Superclass1::GradientImageFilterType elastix::AdvancedMeanSquaresMetric< TElastix >::GradientImageFilterType

Definition at line 96 of file elxAdvancedMeanSquaresMetric.h.

GradientImagePointer

template<class TElastix >

typedef Superclass1::GradientImagePointer elastix::AdvancedMeanSquaresMetric< TElastix >::GradientImagePointer

Definition at line 95 of file elxAdvancedMeanSquaresMetric.h.

GradientImageType

template<class TElastix >

typedef Superclass1::GradientImageType elastix::AdvancedMeanSquaresMetric< TElastix >::GradientImageType

Definition at line 94 of file elxAdvancedMeanSquaresMetric.h.

GradientPixelType

template<class TElastix >

typedef Superclass1::GradientPixelType elastix::AdvancedMeanSquaresMetric< TElastix >::GradientPixelType

Definition at line 93 of file elxAdvancedMeanSquaresMetric.h.

ImageSampleContainerPointer

template<class TElastix >

typedef Superclass1::ImageSampleContainerPointer elastix::AdvancedMeanSquaresMetric< TElastix >::ImageSampleContainerPointer

Definition at line 111 of file elxAdvancedMeanSquaresMetric.h.

ImageSampleContainerType

template<class TElastix >

typedef Superclass1::ImageSampleContainerType elastix::AdvancedMeanSquaresMetric< TElastix >::ImageSampleContainerType

Definition at line 109 of file elxAdvancedMeanSquaresMetric.h.

ImageSamplerPointer

template<class TElastix >

typedef Superclass1::ImageSamplerPointer elastix::AdvancedMeanSquaresMetric< TElastix >::ImageSamplerPointer

Definition at line 108 of file elxAdvancedMeanSquaresMetric.h.

ImageSamplerType

template<class TElastix >

typedef Superclass1::ImageSamplerType elastix::AdvancedMeanSquaresMetric< TElastix >::ImageSamplerType

Definition at line 107 of file elxAdvancedMeanSquaresMetric.h.

InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::AdvancedMeanSquaresMetric< TElastix >::InputPointType

Definition at line 86 of file elxAdvancedMeanSquaresMetric.h.

InterpolatorPointer

template<class TElastix >

typedef Superclass1::InterpolatorPointer elastix::AdvancedMeanSquaresMetric< TElastix >::InterpolatorPointer

Definition at line 91 of file elxAdvancedMeanSquaresMetric.h.

InterpolatorType

template<class TElastix >

typedef Superclass1::InterpolatorType elastix::AdvancedMeanSquaresMetric< TElastix >::InterpolatorType

Definition at line 90 of file elxAdvancedMeanSquaresMetric.h.

ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::AdvancedMeanSquaresMetric< TElastix >::ITKBaseType

Definition at line 136 of file elxAdvancedMeanSquaresMetric.h.

MeasureType

template<class TElastix >

typedef Superclass1::MeasureType elastix::AdvancedMeanSquaresMetric< TElastix >::MeasureType

Definition at line 102 of file elxAdvancedMeanSquaresMetric.h.

MovingImageConstPointer

template<class TElastix >

typedef Superclass1::MovingImageConstPointer elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageConstPointer

Definition at line 80 of file elxAdvancedMeanSquaresMetric.h.

MovingImageDerivativeScalesType

template<class TElastix >

typedef Superclass1::MovingImageDerivativeScalesType elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageDerivativeScalesType

Definition at line 119 of file elxAdvancedMeanSquaresMetric.h.

MovingImageLimiterOutputType

template<class TElastix >

typedef Superclass1::MovingImageLimiterOutputType elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageLimiterOutputType

Definition at line 117 of file elxAdvancedMeanSquaresMetric.h.

MovingImageLimiterType

template<class TElastix >

typedef Superclass1::MovingImageLimiterType elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageLimiterType

Definition at line 113 of file elxAdvancedMeanSquaresMetric.h.

MovingImageMaskPointer

template<class TElastix >

typedef Superclass1::MovingImageMaskPointer elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageMaskPointer

Definition at line 101 of file elxAdvancedMeanSquaresMetric.h.

MovingImageMaskType

template<class TElastix >

typedef Superclass1::MovingImageMaskType elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageMaskType

Definition at line 100 of file elxAdvancedMeanSquaresMetric.h.

MovingImagePixelType

template<class TElastix >

typedef Superclass1::MovingImagePixelType elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImagePixelType

Definition at line 79 of file elxAdvancedMeanSquaresMetric.h.

MovingImageRegionType

template<class TElastix >

typedef Superclass1::MovingImageRegionType elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageRegionType

Definition at line 106 of file elxAdvancedMeanSquaresMetric.h.

MovingImageType

template<class TElastix >

typedef Superclass1::MovingImageType elastix::AdvancedMeanSquaresMetric< TElastix >::MovingImageType

Definition at line 78 of file elxAdvancedMeanSquaresMetric.h.

OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::AdvancedMeanSquaresMetric< TElastix >::OutputPointType

Definition at line 87 of file elxAdvancedMeanSquaresMetric.h.

ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::AdvancedMeanSquaresMetric< TElastix >::ParametersType

Definition at line 104 of file elxAdvancedMeanSquaresMetric.h.

Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::AdvancedMeanSquaresMetric< TElastix >::Pointer

Definition at line 60 of file elxAdvancedMeanSquaresMetric.h.

RealType

template<class TElastix >

typedef Superclass1::RealType elastix::AdvancedMeanSquaresMetric< TElastix >::RealType

Definition at line 92 of file elxAdvancedMeanSquaresMetric.h.

RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::AdvancedMeanSquaresMetric< TElastix >::RegistrationPointer

Definition at line 135 of file elxAdvancedMeanSquaresMetric.h.

RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::AdvancedMeanSquaresMetric< TElastix >::RegistrationType

Definition at line 134 of file elxAdvancedMeanSquaresMetric.h.

Self

template<class TElastix >

typedef AdvancedMeanSquaresMetric elastix::AdvancedMeanSquaresMetric< TElastix >::Self

Standard ITK-stuff.

Definition at line 55 of file elxAdvancedMeanSquaresMetric.h.

Superclass1

template<class TElastix >

typedef itk::AdvancedMeanSquaresImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType > elastix::AdvancedMeanSquaresMetric< TElastix >::Superclass1

Definition at line 58 of file elxAdvancedMeanSquaresMetric.h.

Superclass2

template<class TElastix >

typedef MetricBase< TElastix > elastix::AdvancedMeanSquaresMetric< TElastix >::Superclass2

Definition at line 59 of file elxAdvancedMeanSquaresMetric.h.

TransformJacobianType

template<class TElastix >

typedef Superclass1::TransformJacobianType elastix::AdvancedMeanSquaresMetric< TElastix >::TransformJacobianType

Definition at line 89 of file elxAdvancedMeanSquaresMetric.h.

TransformParametersType

template<class TElastix >

typedef Superclass1::TransformParametersType elastix::AdvancedMeanSquaresMetric< TElastix >::TransformParametersType

Definition at line 88 of file elxAdvancedMeanSquaresMetric.h.

TransformPointer

template<class TElastix >

typedef Superclass1::TransformPointer elastix::AdvancedMeanSquaresMetric< TElastix >::TransformPointer

Definition at line 85 of file elxAdvancedMeanSquaresMetric.h.

TransformType

template<class TElastix >

typedef Superclass1::TransformType elastix::AdvancedMeanSquaresMetric< TElastix >::TransformType

Definition at line 84 of file elxAdvancedMeanSquaresMetric.h.

Constructor & Destructor Documentation

AdvancedMeanSquaresMetric() [1/2]

template<class TElastix >

elastix::AdvancedMeanSquaresMetric< TElastix >::AdvancedMeanSquaresMetric ( )

inlineprotected

The constructor.

Definition at line 153 of file elxAdvancedMeanSquaresMetric.h.

~AdvancedMeanSquaresMetric()

template<class TElastix >

elastix::AdvancedMeanSquaresMetric< TElastix >::~AdvancedMeanSquaresMetric ( )

inlineoverrideprotected

The destructor.

Definition at line 155 of file elxAdvancedMeanSquaresMetric.h.

AdvancedMeanSquaresMetric() [2/2]

template<class TElastix >

elastix::AdvancedMeanSquaresMetric< TElastix >::AdvancedMeanSquaresMetric ( const Self &  )

private

The private constructor.

Member Function Documentation

BeforeEachResolution()

template<class TElastix >

void elastix::AdvancedMeanSquaresMetric< TElastix >::BeforeEachResolution ( void  )

overridevirtual

Do some things before each resolution:

• Set CheckNumberOfSamples setting
• Set UseNormalization setting

Reimplemented from elastix::BaseComponent.

elxClassNameMacro()

template<class TElastix >

elastix::AdvancedMeanSquaresMetric< TElastix >::elxClassNameMacro

(

"AdvancedMeanSquares"

)

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "AdvancedMeanSquares")

GetClassName()

template<class TElastix >

virtual const char * elastix::AdvancedMeanSquaresMetric< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

Initialize()

template<class TElastix >

void elastix::AdvancedMeanSquaresMetric< TElastix >::Initialize ( void  )

override

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::AdvancedMeanSquaresMetric< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::AdvancedMeanSquaresMetric< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

New()

template<class TElastix >

static Pointer elastix::AdvancedMeanSquaresMetric< TElastix >::New ( )

static

Method for creation through the object factory.

operator=()

template<class TElastix >

void elastix::AdvancedMeanSquaresMetric< TElastix >::operator= ( const Self &  )

private

The private copy constructor.