#include <elxAdvancedMattesMutualInformationMetric.h>

Detailed Description

template<class TElastix>
class elastix::AdvancedMattesMutualInformationMetric< TElastix >

A metric based on the itk::ParzenWindowMutualInformationImageToImageMetric.

This metric is based on an adapted version of the itk::MattesMutualInformationImageToImageMetric.

The parameters used in this class are:

Metric: Select this metric as follows:
(Metric "AdvancedMattesMutualInformation")

NumberOfHistogramBins: The size of the histogram. Must be given for each resolution, or for all resolutions at once.
example: (NumberOfHistogramBins 32 32 64)
The default is 32 for each resolution.

NumberOfFixedHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistogramBins is used.
example: (NumberOfFixedHistogramBins 32 32 64)
The default is the value of NumberOfHistogramBins, or, if that one is also not given, 32.

NumberOfMovingHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistogramBins is used.
example: (NumberOfMovingHistogramBins 32 32 64)
The default is the value of NumberOfHistogramBins, or, if that one is also not given, 32.

FixedKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (FixedKernelBSplineOrder 0 1 1)
The default value is 0.

MovingKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (MovingKernelBSplineOrder 3 3 3)
The default value is 3.

FixedLimitRangeRatio: The relative extension of the intensity range of the fixed image.
If your fixed image has grey values from a to b and the FixedLimitRangeRatio is 0.001, the joint histogram will expect fixed image grey values from a-0.001(b-a) to b+0.001(b-a). This may be useful if you use high order B-spline interpolator for the fixed image.
example: (FixedLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.

MovingLimitRangeRatio: The relative extension of the intensity range of the moving image.
If your moving image has grey values from a to b and the MovingLimitRangeRatio is 0.001, the joint histogram will expect moving image grey values from a-0.001(b-a) to b+0.001(b-a). This may be useful if you use high order B-spline interpolator for the moving image.
example: (MovingLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.

FiniteDifferenceDerivative: Experimental feature, do not use.

UseFastAndLowMemoryVersion: Switch between a version of mutual information that explicitely computes the derivatives of the joint histogram to each transformation parameter (false) and a version that computes the mutual information via another route (true). The first option allocates a large 3D matrix of size: NumberOfFixedHistogramBins * NumberOfMovingHistogramBins * number of affected B-spline parameters. This method is faster for a low number of parameters. The second method does not use this huge matrix, and is therefore much more memory efficient for large images and fine B-spline grids. example: (UseFastAndLowMemoryVersion "false")
The default is "true".

See also: ParzenWindowMutualInformationImageToImageMetric

Definition at line 100 of file elxAdvancedMattesMutualInformationMetric.h.

Inheritance diagram for elastix::AdvancedMattesMutualInformationMetric< TElastix >:

Public Types
typedef Superclass2::ConfigurationPointer	ConfigurationPointer

typedef Superclass2::ConfigurationType	ConfigurationType

typedef itk::SmartPointer< const Self >	ConstPointer

typedef Superclass1::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass1::DerivativeType	DerivativeType

typedef Superclass2::ElastixPointer	ElastixPointer

typedef Superclass2::ElastixType	ElastixType

typedef Superclass1::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass1::FixedImageLimiterOutputType	FixedImageLimiterOutputType

typedef Superclass1::FixedImageLimiterType	FixedImageLimiterType

typedef Superclass1::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass1::FixedImageMaskType	FixedImageMaskType

typedef Superclass1::FixedImagePixelType	FixedImagePixelType

typedef Superclass1::FixedImageRegionType	FixedImageRegionType

typedef Superclass1::FixedImageType	FixedImageType

typedef Superclass1::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass1::GradientImageFilterType	GradientImageFilterType

typedef Superclass1::GradientImagePointer	GradientImagePointer

typedef Superclass1::GradientImageType	GradientImageType

typedef Superclass1::GradientPixelType	GradientPixelType

typedef Superclass1::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass1::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass1::ImageSamplerPointer	ImageSamplerPointer

typedef Superclass1::ImageSamplerType	ImageSamplerType

typedef Superclass1::InputPointType	InputPointType

typedef Superclass1::InterpolatorPointer	InterpolatorPointer

typedef Superclass1::InterpolatorType	InterpolatorType

typedef Superclass2::ITKBaseType	ITKBaseType

typedef Superclass1::MeasureType	MeasureType

typedef Superclass1::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass1::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef Superclass1::MovingImageLimiterOutputType	MovingImageLimiterOutputType

typedef Superclass1::MovingImageLimiterType	MovingImageLimiterType

typedef Superclass1::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass1::MovingImageMaskType	MovingImageMaskType

typedef Superclass1::MovingImagePixelType	MovingImagePixelType

typedef Superclass1::MovingImageRegionType	MovingImageRegionType

typedef Superclass1::MovingImageType	MovingImageType

typedef Superclass1::OutputPointType	OutputPointType

typedef Superclass1::ParametersType	ParametersType

typedef itk::SmartPointer< Self >	Pointer

typedef Superclass1::RealType	RealType

typedef Superclass2::RegistrationPointer	RegistrationPointer

typedef Superclass2::RegistrationType	RegistrationType

typedef AdvancedMattesMutualInformationMetric	Self

typedef itk::ParzenWindowMutualInformationImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType >	Superclass1

typedef MetricBase< TElastix >	Superclass2

typedef Superclass1::TransformJacobianType	TransformJacobianType

typedef Superclass1::TransformParametersType	TransformParametersType

typedef Superclass1::TransformPointer	TransformPointer

typedef Superclass1::TransformType	TransformType

Public Types inherited from itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType

typedef Superclass::FixedImageLimiterType	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef Superclass::FixedImagePixelType	FixedImagePixelType

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass::ImageSamplerPointer	ImageSamplerPointer

typedef Superclass::ImageSamplerType	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType

typedef Superclass::MovingImageLimiterType	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef Superclass::MovingImageRegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef ParzenWindowMutualInformationImageToImageMetric	Self

typedef ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass

typedef Superclass::ThreaderType	ThreaderType

typedef Superclass::ThreadInfoType	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageLimiterOutputType	FixedImageLimiterOutputType

typedef Superclass::FixedImageLimiterType	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef Superclass::FixedImagePixelType	FixedImagePixelType

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef Superclass::ImageSampleContainerPointer	ImageSampleContainerPointer

typedef Superclass::ImageSampleContainerType	ImageSampleContainerType

typedef Superclass::ImageSamplerPointer	ImageSamplerPointer

typedef Superclass::ImageSamplerType	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef Superclass::MovingImageLimiterOutputType	MovingImageLimiterOutputType

typedef Superclass::MovingImageLimiterType	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef Superclass::MovingImageRegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef ParzenWindowHistogramImageToImageMetric	Self

typedef AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass

typedef Superclass::ThreaderType	ThreaderType

typedef Superclass::ThreadInfoType	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension >	AdvancedTransformType

typedef BSplineOrder1TransformType::Pointer	BSplineOrder1TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 >	BSplineOrder1TransformType

typedef BSplineOrder2TransformType::Pointer	BSplineOrder2TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 >	BSplineOrder2TransformType

typedef BSplineOrder3TransformType::Pointer	BSplineOrder3TransformPointer

typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 >	BSplineOrder3TransformType

typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension >	CombinationTransformType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef FixedImageLimiterType::OutputType	FixedImageLimiterOutputType

typedef FixedImageLimiterType::Pointer	FixedImageLimiterPointer

typedef LimiterFunctionBase< RealType, FixedImageDimension >	FixedImageLimiterType

typedef Superclass::FixedImageMaskPointer	FixedImageMaskPointer

typedef ImageMaskSpatialObject< itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskSpatialObject2Type

typedef Superclass::FixedImageMaskType	FixedImageMaskType

typedef FixedImageType::PixelType	FixedImagePixelType

typedef FixedImageType::Pointer	FixedImagePointer

typedef Superclass::FixedImageRegionType	FixedImageRegionType

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::GradientImageFilterPointer	GradientImageFilterPointer

typedef Superclass::GradientImageFilterType	GradientImageFilterType

typedef Superclass::GradientImagePointer	GradientImagePointer

typedef Superclass::GradientImageType	GradientImageType

typedef Superclass::GradientPixelType	GradientPixelType

typedef vnl_sparse_matrix< HessianValueType >	HessianType

typedef DerivativeType::ValueType	HessianValueType

typedef ImageSamplerType::OutputVectorContainerPointer	ImageSampleContainerPointer

typedef ImageSamplerType::OutputVectorContainerType	ImageSampleContainerType

typedef ImageSamplerType::Pointer	ImageSamplerPointer

typedef ImageSamplerBase< FixedImageType >	ImageSamplerType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InterpolatorPointer	InterpolatorPointer

typedef Superclass::InterpolatorType	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef FixedArray< double, Self::MovingImageDimension >	MovingImageDerivativeScalesType

typedef MovingImageLimiterType::OutputType	MovingImageLimiterOutputType

typedef MovingImageLimiterType::Pointer	MovingImageLimiterPointer

typedef LimiterFunctionBase< RealType, MovingImageDimension >	MovingImageLimiterType

typedef Superclass::MovingImageMaskPointer	MovingImageMaskPointer

typedef ImageMaskSpatialObject< itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskSpatialObject2Type

typedef Superclass::MovingImageMaskType	MovingImageMaskType

typedef Superclass::MovingImagePixelType	MovingImagePixelType

typedef MovingImageType::Pointer	MovingImagePointer

typedef MovingImageType::RegionType	MovingImageRegionType

typedef Superclass::MovingImageType	MovingImageType

typedef AdvancedTransformType::NumberOfParametersType	NumberOfParametersType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RealType	RealType

typedef TransformType::ScalarType	ScalarType

typedef AdvancedImageToImageMetric	Self

typedef ImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >	Superclass

typedef itk::PlatformMultiThreader	ThreaderType

typedef ThreaderType::WorkUnitInfo	ThreadInfoType

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformParametersType	TransformParametersType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageType >	AdvancedMetricType

typedef Superclass::ConfigurationPointer	ConfigurationPointer

typedef Superclass::ConfigurationType	ConfigurationType

typedef ITKBaseType::ParametersValueType	CoordinateRepresentationType

typedef Superclass::ElastixPointer	ElastixPointer

typedef Superclass::ElastixType	ElastixType

typedef ElastixType::FixedImageType	FixedImageType

typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	FixedPointSetType

typedef FixedImageType::PointType	FixedPointType

typedef FixedPointType::ValueType	FixedPointValueType

typedef AdvancedMetricType::ImageSamplerType	ImageSamplerBaseType

typedef itk::SingleValuedCostFunction	ITKBaseType

typedef ITKBaseType::MeasureType	MeasureType

typedef AdvancedMetricType::MovingImageDerivativeScalesType	MovingImageDerivativeScalesType

typedef ElastixType::MovingImageType	MovingImageType

typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > >	MovingPointSetType

typedef MovingImageType::PointType	MovingPointType

typedef MovingPointType::ValueType	MovingPointValueType

typedef Superclass::RegistrationPointer	RegistrationPointer

typedef Superclass::RegistrationType	RegistrationType

typedef MetricBase	Self

typedef BaseComponentSE< TElastix >	Superclass

Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef Configuration::Pointer	ConfigurationPointer

typedef Configuration	ConfigurationType

typedef itk::WeakPointer< ElastixType >	ElastixPointer

typedef TElastix	ElastixType

typedef RegistrationType *	RegistrationPointer

typedef ElastixType::RegistrationBaseType	RegistrationType

typedef BaseComponentSE	Self

typedef BaseComponent	Superclass

Public Member Functions
void	AfterEachIteration (void) override

void	BeforeEachResolution (void) override

	elxClassNameMacro ("AdvancedMattesMutualInformation")

virtual const char *	GetClassName () const

virtual unsigned int	GetCurrentIteration () const

virtual double	GetParam_c () const

virtual double	GetParam_gamma () const

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetCurrentIteration (unsigned int _arg)

virtual void	SetParam_c (double _arg)

virtual void	SetParam_gamma (double _arg)

Public Member Functions inherited from itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const char *	GetClassName () const

virtual bool	GetUseJacobianPreconditioning () const

MeasureType	GetValue (const ParametersType &parameters) const override

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetUseJacobianPreconditioning (bool _arg)

Public Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual const char *	GetClassName () const

void	GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const override

virtual double	GetFiniteDifferencePerturbation () const

virtual unsigned int	GetFixedKernelBSplineOrder () const

virtual unsigned int	GetMovingKernelBSplineOrder () const

virtual unsigned long	GetNumberOfFixedHistogramBins ()

virtual unsigned long	GetNumberOfMovingHistogramBins ()

virtual bool	GetUseDerivative () const

virtual const bool &	GetUseExplicitPDFDerivatives ()

virtual bool	GetUseFiniteDifferenceDerivative () const

void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetFiniteDifferencePerturbation (double _arg)

virtual void	SetFixedKernelBSplineOrder (unsigned int _arg)

virtual void	SetMovingKernelBSplineOrder (unsigned int _arg)

virtual void	SetNumberOfFixedHistogramBins (unsigned long _arg)

virtual void	SetNumberOfMovingHistogramBins (unsigned long _arg)

virtual void	SetUseDerivative (bool _arg)

virtual void	SetUseExplicitPDFDerivatives (bool _arg)

virtual void	SetUseFiniteDifferenceDerivative (bool _arg)

virtual void	UseExplicitPDFDerivativesOff ()

virtual void	UseExplicitPDFDerivativesOn ()

Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const char *	GetClassName () const

virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

virtual double	GetFixedLimitRangeRatio () const

virtual ImageSamplerType *	GetImageSampler (void) const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const

virtual void	GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const

const AdvancedTransformType *	GetTransform (void) const override

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual const bool &	GetUseMetricSingleThreaded ()

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

virtual const bool &	GetUseMultiThread ()

void	Initialize (void) override

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

virtual void	SetUseMultiThread (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

virtual void	UseMultiThreadOff ()

virtual void	UseMultiThreadOn ()

Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase (void) override

void	BeforeEachResolutionBase (void) override

virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler (void) const

virtual bool	GetAdvancedMetricUseImageSampler (void) const

virtual ITKBaseType *	GetAsITKBaseType (void)

virtual const ITKBaseType *	GetAsITKBaseType (void) const

virtual const char *	GetClassName () const

virtual MeasureType	GetCurrentExactMetricValue (void) const

virtual bool	GetShowExactMetricValue (void) const

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SelectNewSamples (void)

virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
ConfigurationType *	GetConfiguration (void) const

ElastixType *	GetElastix (void) const

RegistrationPointer	GetRegistration (void) const

	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponentSE)

void	SetConfiguration (ConfigurationType *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration (void)

virtual void	AfterEachIterationBase (void)

virtual void	AfterEachResolution (void)

virtual void	AfterEachResolutionBase (void)

virtual void	AfterRegistration (void)

virtual void	AfterRegistrationBase (void)

virtual int	BeforeAll (void)

virtual int	BeforeAllBase (void)

virtual void	BeforeEachResolution (void)

virtual void	BeforeEachResolutionBase (void)

virtual void	BeforeRegistration (void)

virtual void	BeforeRegistrationBase (void)

virtual const char *	elxGetClassName (void) const

const char *	GetComponentLabel (void) const

	ITK_DISALLOW_COPY_AND_ASSIGN (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
static std::string	ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision)

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	AdvancedMattesMutualInformationMetric ()

double	Compute_c (unsigned long k) const

	~AdvancedMattesMutualInformationMetric () override

Protected Member Functions inherited from itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
void	AfterThreadedComputeDerivativeLowMemory (DerivativeType &derivative) const

virtual void	ComputeJacobianPreconditioner (const TransformJacobianType &jac, const NonZeroJacobianIndicesType &nzji, DerivativeType &preconditioner, DerivativeType &divisor) const

void	GetValueAndAnalyticDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

virtual void	GetValueAndAnalyticDerivativeLowMemory (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

void	GetValueAndFiniteDifferenceDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

void	InitializeHistograms (void) override

void	LaunchComputeDerivativeLowMemoryThreaderCallback (void) const

	ParzenWindowMutualInformationImageToImageMetric ()

void	ThreadedComputeDerivativeLowMemory (ThreadIdType threadId)

	~ParzenWindowMutualInformationImageToImageMetric () override

Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
void	AfterThreadedComputePDFs (void) const

virtual void	ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType incrementalPDF, IncrementalMarginalPDFType fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const

virtual void	ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, const unsigned int &direction) const

virtual void	ComputePDFs (const ParametersType &parameters) const

virtual void	ComputePDFsAndIncrementalPDFs (const ParametersType &parameters) const

virtual void	ComputePDFsAndPDFDerivatives (const ParametersType &parameters) const

virtual void	ComputePDFsSingleThreaded (const ParametersType &parameters) const

void	EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const

virtual void	GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const

virtual void	GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const

virtual void	InitializeHistograms (void)

virtual void	InitializeKernels (void)

void	InitializeThreadingParameters (void) const override

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct, AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, ParzenWindowHistogramGetValueAndDerivativePerThreadStruct, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct)

void	LaunchComputePDFsThreaderCallback (void) const

virtual void	NormalizeJointPDF (JointPDFType *pdf, const double &factor) const

virtual void	NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, const double &factor) const

	ParzenWindowHistogramImageToImageMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const override

void	ThreadedComputePDFs (ThreadIdType threadId)

virtual void	UpdateJointPDFAndDerivatives (const RealType &fixedImageValue, const RealType &movingImageValue, const DerivativeType imageJacobian, const NonZeroJacobianIndicesType nzji, JointPDFType *jointPDF) const

virtual void	UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const

void	UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const

	~ParzenWindowHistogramImageToImageMetric () override

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
	AdvancedImageToImageMetric ()

virtual void	AfterThreadedGetValue (MeasureType &value) const

virtual void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const

virtual void	CheckForAdvancedTransform (void)

virtual void	CheckForBSplineInterpolator (void)

virtual void	CheckForBSplineTransform (void) const

virtual void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

virtual bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const

virtual void	InitializeImageSampler (void)

virtual void	InitializeLimiters (void)

virtual void	InitializeThreadingParameters (void) const

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValuePerThreadStruct, AlignedGetValuePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValuePerThreadStruct, PaddedGetValuePerThreadStruct)

void	LaunchGetValueAndDerivativeThreaderCallback (void) const

void	LaunchGetValueThreaderCallback (void) const

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual void	ThreadedGetValue (ThreadIdType threadID)

virtual void	ThreadedGetValueAndDerivative (ThreadIdType threadID)

virtual bool	TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const

	~AdvancedImageToImageMetric () override

Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)

	MetricBase ()

	~MetricBase () override

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Protected Attributes
unsigned long	m_CurrentIteration

Protected Attributes inherited from itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
ParzenWindowMutualInformationMultiThreaderParameterType	m_ParzenWindowMutualInformationThreaderParameters

Protected Attributes inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
double	m_Alpha

KernelFunctionPointer	m_DerivativeMovingKernel

double	m_FixedImageBinSize

MarginalPDFType	m_FixedImageMarginalPDF

double	m_FixedImageNormalizedMin

IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFLeft

IncrementalMarginalPDFPointer	m_FixedIncrementalMarginalPDFRight

KernelFunctionPointer	m_FixedKernel

double	m_FixedParzenTermToIndexOffset

JointPDFDerivativesPointer	m_IncrementalJointPDFLeft

JointPDFDerivativesPointer	m_IncrementalJointPDFRight

JointPDFPointer	m_JointPDF

JointPDFDerivativesPointer	m_JointPDFDerivatives

JointPDFRegionType	m_JointPDFWindow

double	m_MovingImageBinSize

MarginalPDFType	m_MovingImageMarginalPDF

double	m_MovingImageNormalizedMin

IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFLeft

IncrementalMarginalPDFPointer	m_MovingIncrementalMarginalPDFRight

KernelFunctionPointer	m_MovingKernel

double	m_MovingParzenTermToIndexOffset

AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct *	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariables

ThreadIdType	m_ParzenWindowHistogramGetValueAndDerivativePerThreadVariablesSize

ParzenWindowHistogramMultiThreaderParameterType	m_ParzenWindowHistogramThreaderParameters

DerivativeType	m_PerturbedAlphaLeft

DerivativeType	m_PerturbedAlphaRight

std::vector< JointPDFPointer >	m_ThreaderJointPDFs

Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
AdvancedTransformType::Pointer	m_AdvancedTransform

BSplineInterpolatorPointer	m_BSplineInterpolator

BSplineInterpolatorFloatPointer	m_BSplineInterpolatorFloat

CentralDifferenceGradientFilterPointer	m_CentralDifferenceGradientFilter

FixedImageLimiterPointer	m_FixedImageLimiter

FixedImageLimiterOutputType	m_FixedImageMaxLimit

FixedImageLimiterOutputType	m_FixedImageMinLimit

FixedImagePixelType	m_FixedImageTrueMax

FixedImagePixelType	m_FixedImageTrueMin

double	m_FixedLimitRangeRatio

AlignedGetValueAndDerivativePerThreadStruct *	m_GetValueAndDerivativePerThreadVariables

ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize

AlignedGetValuePerThreadStruct *	m_GetValuePerThreadVariables

ThreadIdType	m_GetValuePerThreadVariablesSize

ImageSamplerPointer	m_ImageSampler

bool	m_InterpolatorIsBSpline

bool	m_InterpolatorIsBSplineFloat

bool	m_InterpolatorIsLinear

bool	m_InterpolatorIsReducedBSpline

LinearInterpolatorPointer	m_LinearInterpolator

MovingImageLimiterPointer	m_MovingImageLimiter

MovingImageLimiterOutputType	m_MovingImageMaxLimit

MovingImageLimiterOutputType	m_MovingImageMinLimit

MovingImagePixelType	m_MovingImageTrueMax

MovingImagePixelType	m_MovingImageTrueMin

double	m_MovingLimitRangeRatio

ReducedBSplineInterpolatorPointer	m_ReducedBSplineInterpolator

MultiThreaderParameterType	m_ThreaderMetricParameters

bool	m_TransformIsAdvanced

bool	m_TransformIsBSpline

bool	m_UseMetricSingleThreaded

bool	m_UseMultiThread

bool	m_UseOpenMP

Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue

unsigned int	m_ExactMetricEachXNumberOfIterations

ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing

ExactMetricImageSamplerPointer	m_ExactMetricSampler

bool	m_ShowExactMetricValue

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer	m_Configuration {}

ElastixPointer	m_Elastix {}

RegistrationPointer	m_Registration {}

Private Member Functions
	AdvancedMattesMutualInformationMetric (const Self &)

void	operator= (const Self &)

Private Attributes
double	m_Param_c

double	m_Param_gamma

Additional Inherited Members
Protected Types inherited from itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType

typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType

typedef Superclass::FixedImageIndexType	FixedImageIndexType

typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType

typedef Superclass::FixedImagePointType	FixedImagePointType

typedef Superclass::IncrementalMarginalPDFType	IncrementalMarginalPDFType

typedef Superclass::JointPDFDerivativesIndexType	JointPDFDerivativesIndexType

typedef Superclass::JointPDFDerivativesRegionType	JointPDFDerivativesRegionType

typedef Superclass::JointPDFDerivativesSizeType	JointPDFDerivativesSizeType

typedef Superclass::JointPDFDerivativesType	JointPDFDerivativesType

typedef Superclass::JointPDFIndexType	JointPDFIndexType

typedef Superclass::JointPDFRegionType	JointPDFRegionType

typedef Superclass::JointPDFSizeType	JointPDFSizeType

typedef Superclass::JointPDFType	JointPDFType

typedef Superclass::KernelFunctionType	KernelFunctionType

typedef Superclass::MarginalPDFType	MarginalPDFType

typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType

typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType

typedef Superclass::MovingImageIndexType	MovingImageIndexType

typedef Superclass::MovingImagePointType	MovingImagePointType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef Superclass::ParzenValueContainerType	ParzenValueContainerType

typedef Superclass::PDFDerivativeValueType	PDFDerivativeValueType

typedef Superclass::PDFValueType	PDFValueType

Protected Types inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef Superclass::BSplineInterpolatorType	BSplineInterpolatorType

typedef Superclass::CentralDifferenceGradientFilterType	CentralDifferenceGradientFilterType

typedef Superclass::FixedImageIndexType	FixedImageIndexType

typedef Superclass::FixedImageIndexValueType	FixedImageIndexValueType

typedef Superclass::FixedImagePointType	FixedImagePointType

typedef IncrementalMarginalPDFType::IndexType	IncrementalMarginalPDFIndexType

typedef IncrementalMarginalPDFType::Pointer	IncrementalMarginalPDFPointer

typedef IncrementalMarginalPDFType::RegionType	IncrementalMarginalPDFRegionType

typedef IncrementalMarginalPDFType::SizeType	IncrementalMarginalPDFSizeType

typedef Image< PDFValueType, 2 >	IncrementalMarginalPDFType

typedef JointPDFDerivativesType::IndexType	JointPDFDerivativesIndexType

typedef JointPDFDerivativesType::Pointer	JointPDFDerivativesPointer

typedef JointPDFDerivativesType::RegionType	JointPDFDerivativesRegionType

typedef JointPDFDerivativesType::SizeType	JointPDFDerivativesSizeType

typedef Image< PDFDerivativeValueType, 3 >	JointPDFDerivativesType

typedef JointPDFType::IndexType	JointPDFIndexType

typedef JointPDFType::Pointer	JointPDFPointer

typedef JointPDFType::RegionType	JointPDFRegionType

typedef JointPDFType::SizeType	JointPDFSizeType

typedef Image< PDFValueType, 2 >	JointPDFType

typedef KernelFunctionType::Pointer	KernelFunctionPointer

typedef KernelFunctionBase2< PDFValueType >	KernelFunctionType

typedef Array< PDFValueType >	MarginalPDFType

typedef Superclass::MovingImageContinuousIndexType	MovingImageContinuousIndexType

typedef Superclass::MovingImageDerivativeType	MovingImageDerivativeType

typedef Superclass::MovingImageIndexType	MovingImageIndexType

typedef Superclass::MovingImagePointType	MovingImagePointType

typedef Superclass::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef FixedImageType::OffsetValueType	OffsetValueType

typedef Array< PDFValueType >	ParzenValueContainerType

typedef float	PDFDerivativeValueType

typedef double	PDFValueType

Protected Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
typedef BSplineInterpolatorFloatType::Pointer	BSplineInterpolatorFloatPointer

typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, float >	BSplineInterpolatorFloatType

typedef BSplineInterpolatorType::Pointer	BSplineInterpolatorPointer

typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	BSplineInterpolatorType

typedef CentralDifferenceGradientFilterType::Pointer	CentralDifferenceGradientFilterPointer

typedef GradientImageFilter< MovingImageType, RealType, RealType >	CentralDifferenceGradientFilterType

typedef FixedImageType::IndexType	FixedImageIndexType

typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType

typedef TransformType::InputPointType	FixedImagePointType

typedef LinearInterpolatorType::Pointer	LinearInterpolatorPointer

typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >	LinearInterpolatorType

typedef InterpolatorType::ContinuousIndexType	MovingImageContinuousIndexType

typedef BSplineInterpolatorType::CovariantVectorType	MovingImageDerivativeType

typedef MovingImageType::IndexType	MovingImageIndexType

typedef TransformType::OutputPointType	MovingImagePointType

typedef AdvancedTransformType::NonZeroJacobianIndicesType	NonZeroJacobianIndicesType

typedef ReducedBSplineInterpolatorType::Pointer	ReducedBSplineInterpolatorPointer

typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, double >	ReducedBSplineInterpolatorType

Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer	ExactMetricImageSamplerPointer

typedef itk::ImageGridSampler< FixedImageType >	ExactMetricImageSamplerType

typedef ExactMetricImageSamplerType::SampleGridSpacingType	ExactMetricSampleGridSpacingType

typedef ITKBaseType::ParametersType	ParametersType

Static Protected Member Functions inherited from itk::ParzenWindowMutualInformationImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ComputeDerivativeLowMemoryThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::ParzenWindowHistogramImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ComputePDFsThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Member Typedef Documentation

◆ ConfigurationPointer

template<class TElastix >

typedef Superclass2::ConfigurationPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::ConfigurationPointer

Definition at line 189 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ConfigurationType

template<class TElastix >

typedef Superclass2::ConfigurationType elastix::AdvancedMattesMutualInformationMetric< TElastix >::ConfigurationType

Definition at line 188 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ConstPointer

template<class TElastix >

typedef itk::SmartPointer< const Self > elastix::AdvancedMattesMutualInformationMetric< TElastix >::ConstPointer

Definition at line 116 of file elxAdvancedMattesMutualInformationMetric.h.

◆ CoordinateRepresentationType

template<class TElastix >

typedef Superclass1::CoordinateRepresentationType elastix::AdvancedMattesMutualInformationMetric< TElastix >::CoordinateRepresentationType

Typedefs from the superclass.

Definition at line 133 of file elxAdvancedMattesMutualInformationMetric.h.

◆ DerivativeType

template<class TElastix >

typedef Superclass1::DerivativeType elastix::AdvancedMattesMutualInformationMetric< TElastix >::DerivativeType

Definition at line 159 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ElastixPointer

template<class TElastix >

typedef Superclass2::ElastixPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::ElastixPointer

Definition at line 187 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ElastixType

template<class TElastix >

typedef Superclass2::ElastixType elastix::AdvancedMattesMutualInformationMetric< TElastix >::ElastixType

Typedef's inherited from Elastix.

Definition at line 186 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImageConstPointer

template<class TElastix >

typedef Superclass1::FixedImageConstPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImageConstPointer

Definition at line 138 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImageLimiterOutputType

template<class TElastix >

typedef Superclass1::FixedImageLimiterOutputType elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImageLimiterOutputType

Definition at line 171 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImageLimiterType

template<class TElastix >

typedef Superclass1::FixedImageLimiterType elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImageLimiterType

Definition at line 168 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImageMaskPointer

template<class TElastix >

typedef Superclass1::FixedImageMaskPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImageMaskPointer

Definition at line 155 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImageMaskType

template<class TElastix >

typedef Superclass1::FixedImageMaskType elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImageMaskType

Definition at line 154 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImagePixelType

template<class TElastix >

typedef Superclass1::FixedImagePixelType elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImagePixelType

Definition at line 161 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImageRegionType

template<class TElastix >

typedef Superclass1::FixedImageRegionType elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImageRegionType

Definition at line 139 of file elxAdvancedMattesMutualInformationMetric.h.

◆ FixedImageType

template<class TElastix >

typedef Superclass1::FixedImageType elastix::AdvancedMattesMutualInformationMetric< TElastix >::FixedImageType

Definition at line 137 of file elxAdvancedMattesMutualInformationMetric.h.

◆ GradientImageFilterPointer

template<class TElastix >

typedef Superclass1::GradientImageFilterPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::GradientImageFilterPointer

Definition at line 153 of file elxAdvancedMattesMutualInformationMetric.h.

◆ GradientImageFilterType

template<class TElastix >

typedef Superclass1::GradientImageFilterType elastix::AdvancedMattesMutualInformationMetric< TElastix >::GradientImageFilterType

Definition at line 152 of file elxAdvancedMattesMutualInformationMetric.h.

◆ GradientImagePointer

template<class TElastix >

typedef Superclass1::GradientImagePointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::GradientImagePointer

Definition at line 151 of file elxAdvancedMattesMutualInformationMetric.h.

◆ GradientImageType

template<class TElastix >

typedef Superclass1::GradientImageType elastix::AdvancedMattesMutualInformationMetric< TElastix >::GradientImageType

Definition at line 150 of file elxAdvancedMattesMutualInformationMetric.h.

◆ GradientPixelType

template<class TElastix >

typedef Superclass1::GradientPixelType elastix::AdvancedMattesMutualInformationMetric< TElastix >::GradientPixelType

Definition at line 149 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ImageSampleContainerPointer

template<class TElastix >

typedef Superclass1::ImageSampleContainerPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::ImageSampleContainerPointer

Definition at line 167 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ImageSampleContainerType

template<class TElastix >

typedef Superclass1::ImageSampleContainerType elastix::AdvancedMattesMutualInformationMetric< TElastix >::ImageSampleContainerType

Definition at line 165 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ImageSamplerPointer

template<class TElastix >

typedef Superclass1::ImageSamplerPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::ImageSamplerPointer

Definition at line 164 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ImageSamplerType

template<class TElastix >

typedef Superclass1::ImageSamplerType elastix::AdvancedMattesMutualInformationMetric< TElastix >::ImageSamplerType

Definition at line 163 of file elxAdvancedMattesMutualInformationMetric.h.

◆ InputPointType

template<class TElastix >

typedef Superclass1::InputPointType elastix::AdvancedMattesMutualInformationMetric< TElastix >::InputPointType

Definition at line 142 of file elxAdvancedMattesMutualInformationMetric.h.

◆ InterpolatorPointer

template<class TElastix >

typedef Superclass1::InterpolatorPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::InterpolatorPointer

Definition at line 147 of file elxAdvancedMattesMutualInformationMetric.h.

◆ InterpolatorType

template<class TElastix >

typedef Superclass1::InterpolatorType elastix::AdvancedMattesMutualInformationMetric< TElastix >::InterpolatorType

Definition at line 146 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ITKBaseType

template<class TElastix >

typedef Superclass2::ITKBaseType elastix::AdvancedMattesMutualInformationMetric< TElastix >::ITKBaseType

Definition at line 192 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MeasureType

template<class TElastix >

typedef Superclass1::MeasureType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MeasureType

Definition at line 158 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageConstPointer

template<class TElastix >

typedef Superclass1::MovingImageConstPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageConstPointer

Definition at line 136 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageDerivativeScalesType

template<class TElastix >

typedef Superclass1::MovingImageDerivativeScalesType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageDerivativeScalesType

Definition at line 175 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageLimiterOutputType

template<class TElastix >

typedef Superclass1::MovingImageLimiterOutputType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageLimiterOutputType

Definition at line 173 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageLimiterType

template<class TElastix >

typedef Superclass1::MovingImageLimiterType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageLimiterType

Definition at line 169 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageMaskPointer

template<class TElastix >

typedef Superclass1::MovingImageMaskPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageMaskPointer

Definition at line 157 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageMaskType

template<class TElastix >

typedef Superclass1::MovingImageMaskType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageMaskType

Definition at line 156 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImagePixelType

template<class TElastix >

typedef Superclass1::MovingImagePixelType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImagePixelType

Definition at line 135 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageRegionType

template<class TElastix >

typedef Superclass1::MovingImageRegionType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageRegionType

Definition at line 162 of file elxAdvancedMattesMutualInformationMetric.h.

◆ MovingImageType

template<class TElastix >

typedef Superclass1::MovingImageType elastix::AdvancedMattesMutualInformationMetric< TElastix >::MovingImageType

Definition at line 134 of file elxAdvancedMattesMutualInformationMetric.h.

◆ OutputPointType

template<class TElastix >

typedef Superclass1::OutputPointType elastix::AdvancedMattesMutualInformationMetric< TElastix >::OutputPointType

Definition at line 143 of file elxAdvancedMattesMutualInformationMetric.h.

◆ ParametersType

template<class TElastix >

typedef Superclass1::ParametersType elastix::AdvancedMattesMutualInformationMetric< TElastix >::ParametersType

Definition at line 160 of file elxAdvancedMattesMutualInformationMetric.h.

◆ Pointer

template<class TElastix >

typedef itk::SmartPointer< Self > elastix::AdvancedMattesMutualInformationMetric< TElastix >::Pointer

Definition at line 115 of file elxAdvancedMattesMutualInformationMetric.h.

◆ RealType

template<class TElastix >

typedef Superclass1::RealType elastix::AdvancedMattesMutualInformationMetric< TElastix >::RealType

Definition at line 148 of file elxAdvancedMattesMutualInformationMetric.h.

◆ RegistrationPointer

template<class TElastix >

typedef Superclass2::RegistrationPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::RegistrationPointer

Definition at line 191 of file elxAdvancedMattesMutualInformationMetric.h.

◆ RegistrationType

template<class TElastix >

typedef Superclass2::RegistrationType elastix::AdvancedMattesMutualInformationMetric< TElastix >::RegistrationType

Definition at line 190 of file elxAdvancedMattesMutualInformationMetric.h.

◆ Self

template<class TElastix >

typedef AdvancedMattesMutualInformationMetric elastix::AdvancedMattesMutualInformationMetric< TElastix >::Self

Standard ITK-stuff.

Definition at line 110 of file elxAdvancedMattesMutualInformationMetric.h.

◆ Superclass1

template<class TElastix >

typedef itk::ParzenWindowMutualInformationImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType > elastix::AdvancedMattesMutualInformationMetric< TElastix >::Superclass1

Definition at line 113 of file elxAdvancedMattesMutualInformationMetric.h.

◆ Superclass2

template<class TElastix >

typedef MetricBase< TElastix > elastix::AdvancedMattesMutualInformationMetric< TElastix >::Superclass2

Definition at line 114 of file elxAdvancedMattesMutualInformationMetric.h.

◆ TransformJacobianType

template<class TElastix >

typedef Superclass1::TransformJacobianType elastix::AdvancedMattesMutualInformationMetric< TElastix >::TransformJacobianType

Definition at line 145 of file elxAdvancedMattesMutualInformationMetric.h.

◆ TransformParametersType

template<class TElastix >

typedef Superclass1::TransformParametersType elastix::AdvancedMattesMutualInformationMetric< TElastix >::TransformParametersType

Definition at line 144 of file elxAdvancedMattesMutualInformationMetric.h.

◆ TransformPointer

template<class TElastix >

typedef Superclass1::TransformPointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::TransformPointer

Definition at line 141 of file elxAdvancedMattesMutualInformationMetric.h.

◆ TransformType

template<class TElastix >

typedef Superclass1::TransformType elastix::AdvancedMattesMutualInformationMetric< TElastix >::TransformType

Definition at line 140 of file elxAdvancedMattesMutualInformationMetric.h.

Constructor & Destructor Documentation

◆ AdvancedMattesMutualInformationMetric() [1/2]

template<class TElastix >

elastix::AdvancedMattesMutualInformationMetric< TElastix >::AdvancedMattesMutualInformationMetric ( )

protected

The constructor.

◆ ~AdvancedMattesMutualInformationMetric()

template<class TElastix >

elastix::AdvancedMattesMutualInformationMetric< TElastix >::~AdvancedMattesMutualInformationMetric ( )

inlineoverrideprotected

The destructor.

Definition at line 228 of file elxAdvancedMattesMutualInformationMetric.h.

◆ AdvancedMattesMutualInformationMetric() [2/2]

template<class TElastix >

elastix::AdvancedMattesMutualInformationMetric< TElastix >::AdvancedMattesMutualInformationMetric ( const Self & )

private

The private constructor.

Member Function Documentation

◆ AfterEachIteration()

template<class TElastix >

void elastix::AdvancedMattesMutualInformationMetric< TElastix >::AfterEachIteration ( void )

overridevirtual

Update the CurrenIteration. This is only important if a finite difference derivative estimation is used (selected by the experimental parameter FiniteDifferenceDerivative)

Reimplemented from elastix::BaseComponent.

◆ BeforeEachResolution()

template<class TElastix >

void elastix::AdvancedMattesMutualInformationMetric< TElastix >::BeforeEachResolution ( void )

overridevirtual

Execute stuff before each new pyramid resolution:

Set the number of histogram bins.
Set the CheckNumberOfSamples option.
Set the fixed/moving LimitRangeRatio
Set the fixed/moving limiter.

Reimplemented from elastix::BaseComponent.

◆ Compute_c()

template<class TElastix >

double elastix::AdvancedMattesMutualInformationMetric< TElastix >::Compute_c ( unsigned long k ) const

protected

A function to compute the finite difference perturbation in each iteration

◆ elxClassNameMacro()

template<class TElastix >

elastix::AdvancedMattesMutualInformationMetric< TElastix >::elxClassNameMacro ( "AdvancedMattesMutualInformation" )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "AdvancedMattesMutualInformation")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::AdvancedMattesMutualInformationMetric< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

◆ GetCurrentIteration()

template<class TElastix >

virtual unsigned int elastix::AdvancedMattesMutualInformationMetric< TElastix >::GetCurrentIteration ( ) const

virtual

◆ GetParam_c()

template<class TElastix >

virtual double elastix::AdvancedMattesMutualInformationMetric< TElastix >::GetParam_c ( ) const

virtual

◆ GetParam_gamma()

template<class TElastix >

virtual double elastix::AdvancedMattesMutualInformationMetric< TElastix >::GetParam_gamma ( ) const

virtual

◆ Initialize()

template<class TElastix >

void elastix::AdvancedMattesMutualInformationMetric< TElastix >::Initialize ( void )

override

Set up a timer to measure the initialization time and call the Superclass' implementation.

◆ itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::AdvancedMattesMutualInformationMetric< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension
	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::AdvancedMattesMutualInformationMetric< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension
	)

The moving image dimension.

◆ New()

template<class TElastix >

static Pointer elastix::AdvancedMattesMutualInformationMetric< TElastix >::New ( )

static

Method for creation through the object factory.

◆ operator=()

template<class TElastix >

void elastix::AdvancedMattesMutualInformationMetric< TElastix >::operator= ( const Self & )

private

The private copy constructor.

◆ SetCurrentIteration()

template<class TElastix >

virtual void elastix::AdvancedMattesMutualInformationMetric< TElastix >::SetCurrentIteration ( unsigned int _arg )

virtual

Set/Get the current iteration. For finite difference derivative estimation

◆ SetParam_c()

template<class TElastix >

virtual void elastix::AdvancedMattesMutualInformationMetric< TElastix >::SetParam_c ( double _arg )

virtual

Set/Get c. For finite difference derivative estimation

◆ SetParam_gamma()

template<class TElastix >

virtual void elastix::AdvancedMattesMutualInformationMetric< TElastix >::SetParam_gamma ( double _arg )

virtual

Set/Get gamma. For finite difference derivative estimation

Field Documentation

◆ m_CurrentIteration

template<class TElastix >

unsigned long elastix::AdvancedMattesMutualInformationMetric< TElastix >::m_CurrentIteration

protected

Definition at line 230 of file elxAdvancedMattesMutualInformationMetric.h.

◆ m_Param_c

template<class TElastix >

double elastix::AdvancedMattesMutualInformationMetric< TElastix >::m_Param_c

private

Definition at line 242 of file elxAdvancedMattesMutualInformationMetric.h.

◆ m_Param_gamma

template<class TElastix >

double elastix::AdvancedMattesMutualInformationMetric< TElastix >::m_Param_gamma

private

Definition at line 243 of file elxAdvancedMattesMutualInformationMetric.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ ConfigurationPointer

◆ ConfigurationType

◆ ConstPointer

◆ CoordinateRepresentationType

◆ DerivativeType

◆ ElastixPointer

◆ ElastixType

◆ FixedImageConstPointer

◆ FixedImageLimiterOutputType

◆ FixedImageLimiterType

◆ FixedImageMaskPointer

◆ FixedImageMaskType

◆ FixedImagePixelType

◆ FixedImageRegionType

◆ FixedImageType

◆ GradientImageFilterPointer

◆ GradientImageFilterType

◆ GradientImagePointer

◆ GradientImageType

◆ GradientPixelType

◆ ImageSampleContainerPointer

◆ ImageSampleContainerType

◆ ImageSamplerPointer

◆ ImageSamplerType

◆ InputPointType

◆ InterpolatorPointer

◆ InterpolatorType

◆ ITKBaseType

◆ MeasureType

◆ MovingImageConstPointer

◆ MovingImageDerivativeScalesType

◆ MovingImageLimiterOutputType

◆ MovingImageLimiterType

◆ MovingImageMaskPointer

◆ MovingImageMaskType

◆ MovingImagePixelType

◆ MovingImageRegionType

◆ MovingImageType

◆ OutputPointType

◆ ParametersType

◆ Pointer

◆ RealType

◆ RegistrationPointer

◆ RegistrationType

◆ Self

◆ Superclass1

◆ Superclass2

◆ TransformJacobianType

◆ TransformParametersType

◆ TransformPointer

◆ TransformType

Constructor & Destructor Documentation

◆ AdvancedMattesMutualInformationMetric() [1/2]

◆ ~AdvancedMattesMutualInformationMetric()

◆ AdvancedMattesMutualInformationMetric() [2/2]

Member Function Documentation

◆ AfterEachIteration()

◆ BeforeEachResolution()

◆ Compute_c()

◆ elxClassNameMacro()

◆ GetClassName()

◆ GetCurrentIteration()

◆ GetParam_c()

◆ GetParam_gamma()

◆ Initialize()

◆ itkStaticConstMacro() [1/2]

◆ itkStaticConstMacro() [2/2]

◆ New()

◆ operator=()

◆ SetCurrentIteration()